Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g2554 ATGGAAATTCTGTATACCGGTTGCTCTGAGACAAATCAAGGAGCAGCTTACGGACCTAATGAAGAACATATTTGCGTTGAAAATTGCGAATATGATATTTCAAATCTTGATGGTGAACTCAGTGACAGTTCATTTGTAATGGAAGGGCTTCATATGGATTCATTTAGCTTGCTAGCTGCTACTAAGGGTCAACAATGTCAAGCATATATCAAAGACAAGGGAAGGCAGTGCGTGAGAACCACAATTGGTAACAATAGATACTGTTGCGTGCATTTCTTAAGTAAAAAAGAAAGGCGTGTTAAATCAATCACTCCAATTTGTGGAGGTACAACTGCTGCTGATACTAGATGTAAGAATCATTCCCTTCCCAGATTATCTTTTTGTAAGAAACATCTGCACAAAGCTGAGATGGGTCAGACCTCAAATTCAATATCTCGTACATTAAAGAGGAAAGCTGAAGTACATTGCAGTGGTTCCCAGAGCCTGATTTGCAAAGACTTGGTGTTCGTACATCTGGAAAGTCCATTGGAGATCAATCCAGAATCGGTCATCAATGATGATGATGATGATTCTTTCTTCGCAAAGAACATCTTTGGCGAAACGCTCAAGCTTTCCGGTAATGATCAGTGGACAGGCTCTCCTAGCTATGGTAATGATCATAATGAAGACTTTTGTATTGATAATGAGAATGCTGTTAAGTGTAAGGTCTGCTTTGAAGAATTTTCTGATAACCAAACACTTGGCAACCATTGGATGGAAAGTCATGAAAAGGAAGCACAATGGCTGTTCAGAGGTTATGCATGTGCCTTTTGTTTTGATTCTTTCGCTAACAAAAAACTATTGGAATCACATGTTCAGAAGAGACACTATGCGCAGTTTGGTGAACACTGCTTGCTTTTTCTATGTATTCCTTGTGGTTGTCATTTTGGAAATATGGAGGAATTATGGTTGCATGTTAAGTCAGTTCACCCTGTCGAATTTGAGCTACTTTCGAAAACTCCTGAGCAACTAATGTTGTCTACCGGTGATGATTCTCCTAAAATGATGGAGCAGGGAAATGAAGCTTCTTTGGGCAATGATAATTCCGAGAATCGAAGTGGTTCGCGGAAGTTTAGTTGCAGGTTTTGTGATTTGAAATTTGATTTACTACCTGATCTCGGTCGCCATCATCAAGCTGCTCATATGGAGCGCAATCTAGCCAACAGGCGCTTGGCAAATAGTGGAGTTCGTTATTATGCTCACAGACTAAAATCTGGCAGACTTACCCGTCCTAATCCTAAATTTGAAAGAGGTTTGGAAGAAGCATCAAATAGGACCAGGAGAAGGGCTGAAGCTAATTTCAAGAAAAGAAATCAGGCAAATAAGTTGCTTGAGATGGGAGAAATATCCATCCAGCCGCCTCATGCAGATGAATTGGAAAAATCTCAATGCTCAGAGGCTGCAAATACTTTGTTTCGTTGCAGTGAGAAATAA 1473 0.4005 MEILYTGCSETNQGAAYGPNEEHICVENCEYDISNLDGELSDSSFVMEGLHMDSFSLLAATKGQQCQAYIKDKGRQCVRTTIGNNRYCCVHFLSKKERRVKSITPICGGTTAADTRCKNHSLPRLSFCKKHLHKAEMGQTSNSISRTLKRKAEVHCSGSQSLICKDLVFVHLESPLEINPESVINDDDDDSFFAKNIFGETLKLSGNDQWTGSPSYGNDHNEDFCIDNENAVKCKVCFEEFSDNQTLGNHWMESHEKEAQWLFRGYACAFCFDSFANKKLLESHVQKRHYAQFGEHCLLFLCIPCGCHFGNMEELWLHVKSVHPVEFELLSKTPEQLMLSTGDDSPKMMEQGNEASLGNDNSENRSGSRKFSCRFCDLKFDLLPDLGRHHQAAHMERNLANRRLANSGVRYYAHRLKSGRLTRPNPKFERGLEEASNRTRRRAEANFKKRNQANKLLEMGEISIQPPHADELEKSQCSEAANTLFRCSEK* 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g2554 490 ProSitePatterns Zinc finger C2H2 type domain signature. 302 323 IPR013087 -
Mtr8g2554 490 PANTHER SET DOMAIN PROTEIN 60 485 - -
Mtr8g2554 490 PANTHER SET DOMAIN PROTEIN 2 63 - -
Mtr8g2554 490 ProSitePatterns Zinc finger C2H2 type domain signature. 268 289 IPR013087 -
Mtr8g2554 490 ProSitePatterns Zinc finger C2H2 type domain signature. 234 255 IPR013087 -
Mtr8g2554 490 ProSitePatterns Zinc finger C2H2 type domain signature. 373 394 IPR013087 -
Mtr8g2554 490 MobiDBLite consensus disorder prediction 340 367 - -
Mtr8g2554 490 ProSiteProfiles Zinc finger C2H2 type domain profile. 232 260 IPR013087 -
Mtr8g2554 490 ProSiteProfiles Zinc finger C2H2 type domain profile. 300 328 IPR013087 -
Mtr8g2554 490 MobiDBLite consensus disorder prediction 352 367 - -
Mtr8g2554 490 SMART c2h2final6 232 255 IPR013087 -
Mtr8g2554 490 SMART c2h2final6 300 323 IPR013087 -
Mtr8g2554 490 SMART c2h2final6 266 289 IPR013087 -
Mtr8g2554 490 SMART c2h2final6 371 394 IPR013087 -
Mtr8g2554 490 Gene3D Classic Zinc Finger 232 290 - -
Mtr8g2554 490 ProSiteProfiles Zinc finger C2H2 type domain profile. 266 294 IPR013087 -
Mtr8g2554 490 Pfam Zinc finger C2H2-type, 3 repeats 268 395 IPR040689 -
Mtr8g2554 490 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR5 2 63 - -
Mtr8g2554 490 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR5 60 485 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g2554 Mtr-Chr8 35971603 35979849 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g2554 260 490 C2H2 Transcription Factor Family AT2G23740 45.188 5.62e-57 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mtr8g2554 zf-C2H2_3rep 1.6e-54 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g2554 - - mtr:MTR_8g078700 1027.31