Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g2553 ATGGCAATGCTTCATAATGAAGAACATATTTGTGTTGTAAATCGCGAATATGATATATCGAAAATGGATGATGAACTCAGCGACAGTTCAGTTGTAATGAAAGAGTCTGATATAGAAAACCAAAGGGATTCGCTTAGCTTGCAAGAATCTGCAGAAATGATCTCCTATAGCAGTGGAACAGTATCAAGGCCTGTGGATGAAATGGCTATTCAAATATTTGCAGAAGCTGGTACCAAGGATCGACAATGTCGAGCATATGTCAAAGACAAGGGAAGGCAGTGTGTGAGAACCGCAATTGGTAACAATATATACTGTTGTGCTCATTTCTCAAACAAAAGAGAAAGACGTCTTAAAGTAAGCACTCCCATTTGTGGAGGTACAACTGGTTCTGGTAATAGCTGTAAGTATCGTTCCCATCCTGGATTTTCTTTTTGTAAGAGACATTGGCACAAAGCCGAGACGGGCCAGACCTCAAATTCAAACCATCGTACATTAAAGAGGAAAGCTGAAGAAAATTGTGGTGGTTCCCAGAACCTGATTTGCACGGACTTGGTGTTGGCACATCCGGAAAGTGCATTGGAGATCAATCCAGTGTCGGTCATCAATGATGTTGATCCTTTCTTTGCAAAGAACATCTCAGGCGAAACGCTCAAGCTTTCTGGTAATGATCATAATGAAGACTCTTGTATTGATAATGAGAATGCTGTTAAGGAAAAATTAGGGTCGTCGCGAAAGGTTATAGTGTTATGCAATGACATAAGCTTTGCGGCGGAATCAACTCCTGTGATATGTGTAGTAGATCTACAAGTACTAAATTATCTTTGTGAGCAAGAGCGATATGTATATCTTCCTAAGCCTTGGGAGATGTTTACCTATGTGACAAAGCCGATTCTTGATCGATTGCGTAGTCTTGATTCTGAGGATCTGCATCTGTCTTGTAATTGCTTATCTTCTACTTGCTGTCCTGAAACGTGTGATCACGTATACCTTTTTGATGAAGAAAAGGACATATTTGGGAAACCAATGGCCGGAAGGTTCGCATACGATGTAAATGGTCGAATCATATTGGAGGAAGGTAGTCTTGTCTTCGAGTGCAACGATAAGTGCGGATGCAATAAAACCTGTCCAAACAGAATATTGCAGAACGGAGTTCGTGTTAAATTAGAGGTTTTTATGACAGAGAAAAAGGGATTCGGAGTAAGGGCTGGTGAAGCTATTTTGCGTGGCACGTTTGTGTGTGAGTACATTGGTGAAGTTTTAGAGCAGCAGGAGGCACACAACAGACGCGGAAGCAAAGAAAATTGCAGTTATTTCTTAGACATTGATGCTCGTGCTAACCATACGAGTAGATTGGTCGAAGGACATCCCCGATATGTCATTGATTCTACTACATATGGAAATGTGTCTAGGTTCATCAATAACAGTTGTTCACCCAATCTCGTGGATTACAAAGTTCTTGTAGAGGCCACGGATTGTAAGCATGCACATATCGGTCTTTACGCAAGTCGAGATATTGCTTTGGGTGAAGAATTAACATTTAATTATGACTATGAGCCTGTGCCCGGAGAAGGAGATTGTCTTTGTGGATCTTTGAAATGCTGA 1602 0.4101 MAMLHNEEHICVVNREYDISKMDDELSDSSVVMKESDIENQRDSLSLQESAEMISYSSGTVSRPVDEMAIQIFAEAGTKDRQCRAYVKDKGRQCVRTAIGNNIYCCAHFSNKRERRLKVSTPICGGTTGSGNSCKYRSHPGFSFCKRHWHKAETGQTSNSNHRTLKRKAEENCGGSQNLICTDLVLAHPESALEINPVSVINDVDPFFAKNISGETLKLSGNDHNEDSCIDNENAVKEKLGSSRKVIVLCNDISFAAESTPVICVVDLQVLNYLCEQERYVYLPKPWEMFTYVTKPILDRLRSLDSEDLHLSCNCLSSTCCPETCDHVYLFDEEKDIFGKPMAGRFAYDVNGRIILEEGSLVFECNDKCGCNKTCPNRILQNGVRVKLEVFMTEKKGFGVRAGEAILRGTFVCEYIGEVLEQQEAHNRRGSKENCSYFLDIDARANHTSRLVEGHPRYVIDSTTYGNVSRFINNSCSPNLVDYKVLVEATDCKHAHIGLYASRDIALGEELTFNYDYEPVPGEGDCLCGSLKC* 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g2553 533 PANTHER SET DOMAIN PROTEIN 36 241 - -
Mtr8g2553 533 PANTHER SET DOMAIN PROTEIN 239 533 - -
Mtr8g2553 533 Pfam SET domain 397 515 IPR001214 GO:0005515
Mtr8g2553 533 Gene3D SET domain 226 520 IPR046341 -
Mtr8g2553 533 ProSiteProfiles SET domain profile. 386 516 IPR001214 GO:0005515
Mtr8g2553 533 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR5 36 241 - -
Mtr8g2553 533 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR5 239 533 - -
Mtr8g2553 533 SMART preset_2 250 370 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Mtr8g2553 533 SMART set_7 386 522 IPR001214 GO:0005515
Mtr8g2553 533 ProSiteProfiles Pre-SET domain profile. 311 383 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Mtr8g2553 533 SUPERFAMILY SET domain 242 528 IPR046341 -
Mtr8g2553 533 Pfam Pre-SET motif 279 378 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g2553 Mtr-Chr8 35957946 35969400 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g2553 248 533 C2H2 Transcription Factor Family AT2G23740 57.095 5.06e-96 316
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Mtr8g2553 SET 4.6e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g2553 - - mtr:MTR_8g078505 1096.26