Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g2551 ATGGGAATAGCAACAACACCATCATCAATTCCTTCAACTTTCTCAAATTCATCAAGCATACAAAATTATCATAGTTCCTTTAATTCATCAATCTTAGAAAAGTCTCAAAACTCAACCAATTCTATGTCCCAAGATTATCATCATCACCACCACCAGAACCACCACCAGCAAGGAATCTTCGCCTTCTCGAACGGATTCGAGAGATCGAACACTCCAGAAAACAACAATCCACACCAGCAACAACAGCAAATTCAAAGAGACAAAGTGAGAATTCAAGACTTCGACTCACAACAACCACCACAACCACCGCCGCCGCCACTAATAGGCAACATAGAAGAAGAACAAGAAGCTCTACCGGTTTACGAAACAACCGGAATGTTGTCCGAGATGTTCAATTTCCCTCACGGCGCCTCGGCAGCCGAATTATTAGAACAGCAGCAGCAGCAGCAACAACAACAAATGGCATCAACAAGAACACCACAAGCACCACATGGAATAGGCAATTCCAGTGACTGGTACGGAAACAGACAAACGATGTTAACAGATTCAAAAAATCATCATAATAATCGTGACAGTAGCAGCAGCAGCAGCATATTTCATCATCAAAATCATCATCAGATGTCAAACATTAATGCTGAGTCAGCAGCTGCCATGCAGCTTTTTCTCATGAACCCGCAAACCACCAGATCCCCATCACCTCCACCTCAACCTCATCCTTCATCTACTAATTCTTCCACTCTCCACATGTTACTTCCCAATCCTTCAACAACTAATCTCCAAGGTTATAATTCCGGAGCCGGAGGGTCTTTTGGACAATTCACATGGGCTCAAGAAGGAGGAGGAGGAGGAGCAACATCAAGTCATCACCAACTCAACAACAACCAACCAGAAATGGCAAGTGTTGTTGAAGGACAAGGTCTTTCGTTGTCGTTATCGTCTTCCTTACAACATCATCATTCAGAGGATTTAAGAATGGGAGATGCTGCTGCTGGTGGTTTTCTATATTACAATCAAGGAGGACCAGGAACTTCTTACAAGAATCTTGGTAGTGTTCATCATCATCATTTACAAGGAGGTGGATTAGGACAGATTAATCATATTCATCAAGGACATGTTGGATTTGGTTCATCTTCTTCTTCTTCTTCTTTAGGTGTTGTTAATGTGTTGAGGAATTCAAAATATGTTAAAGCTGCTCAAGAATTGTTGGAAGAGTTTTGCAGTGTTGGAAGGGGTCAATTCAAGAAGAATAAATTTAGTAGACAATTATCAAACCCTAATTCAAATCAAGGTGGTGGTGGTGGTAGTGTTGGTGGTGGTGGTGCTTCTTCATCTTCTTCAAAAGATGTTTCACCTTTGTCACCTGCTGATAGGATTGAGCATCAAAGAAGGAAGGTCAAACTTCTAACCATGCTTGACGAGGTGGATAGAAGATACAGTCATTACTGTGAACAAATGCAAATGGTGGTGAACTCATTTGACCTAGTAATGGGATTTGGAGCAGCAGTTCCATACACGGCACTAGCTCAGAAAGCAATGTCACGCCATTTTCGTTGTTTAAAGGATGCAATAACAGCACAGTTGAAACATAGTTGTGAGTTATTAGGAGAGAAAGATGGTGTGGGGACCTCAGGTTTGACCAAAGGAGAGACACCAAGACTTAAACTTCTTGAACAAAGCTTAAGACAGCAGAGAGCGTTTCATCAGATGGGGATGATGGAACAAGAAGCTTGGAGACCACAGAGAGGTTTGCCTGAACGATCTGTCAACATTTTGAGAGCCTGGCTTTTTGAACATTTTCTTCATCCGTACCCGAGTGATGCAGATAAGCATCTCTTAGCAAGACAGACTGGCCTTTCCAGAAATCAGGTATCAAACTGGTTCATTAATGCTAGGGTTCGATTGTGGAAACCCATGGTAGAAGATATGTACCAACAAGAACTTAAAGAAGCAGAAGGATCATCAGAAGGAGATCAAGAAGATAGAGAAAACAAGAATCCTCAAAGCAGTACCAGCAACAACAATAACAACACAAGTGGTCACTTATCTACTACTACAACAACAACAAATATTATTGCACAAACTCCAACACAACCTTCAACAACAACATCTACAACAACAACACCACAACCTACAAGTAACAACAATCAGCTGATGAGATCCAACAATACTATCAATGCCAATGAAAACGACCCATCACTTACACCATTAATAAATAGACAAGGCTTCTCGGAAAACCAAGCAATGTTGTTGCAACAACCATCTTCCACCGTTAAAACCACCGTCTCTGAGGTGGCACCACCTATCTCCGATTCAATGGCTATTGATGACACTTGTCGACATGGCAGCTTTGTTTCAGCGGAATATGGGACCACTACTGGTACCTCTGCTGACATTGGTTCTACACTCATCAGATTTGGGACCAATACTTCTGGTGACGTGTCACTCACTTTAGGGCTACGTCACGCCGGAAATTTGCCTGATAAAACATCTTTCTCTCTTACAGACTTTGGAGGCATTTAA 2520 0.419 MGIATTPSSIPSTFSNSSSIQNYHSSFNSSILEKSQNSTNSMSQDYHHHHHQNHHQQGIFAFSNGFERSNTPENNNPHQQQQQIQRDKVRIQDFDSQQPPQPPPPPLIGNIEEEQEALPVYETTGMLSEMFNFPHGASAAELLEQQQQQQQQQMASTRTPQAPHGIGNSSDWYGNRQTMLTDSKNHHNNRDSSSSSSIFHHQNHHQMSNINAESAAAMQLFLMNPQTTRSPSPPPQPHPSSTNSSTLHMLLPNPSTTNLQGYNSGAGGSFGQFTWAQEGGGGGATSSHHQLNNNQPEMASVVEGQGLSLSLSSSLQHHHSEDLRMGDAAAGGFLYYNQGGPGTSYKNLGSVHHHHLQGGGLGQINHIHQGHVGFGSSSSSSSLGVVNVLRNSKYVKAAQELLEEFCSVGRGQFKKNKFSRQLSNPNSNQGGGGGSVGGGGASSSSSKDVSPLSPADRIEHQRRKVKLLTMLDEVDRRYSHYCEQMQMVVNSFDLVMGFGAAVPYTALAQKAMSRHFRCLKDAITAQLKHSCELLGEKDGVGTSGLTKGETPRLKLLEQSLRQQRAFHQMGMMEQEAWRPQRGLPERSVNILRAWLFEHFLHPYPSDADKHLLARQTGLSRNQVSNWFINARVRLWKPMVEDMYQQELKEAEGSSEGDQEDRENKNPQSSTSNNNNNTSGHLSTTTTTTNIIAQTPTQPSTTTSTTTTPQPTSNNNQLMRSNNTINANENDPSLTPLINRQGFSENQAMLLQQPSSTVKTTVSEVAPPISDSMAIDDTCRHGSFVSAEYGTTTGTSADIGSTLIRFGTNTSGDVSLTLGLRHAGNLPDKTSFSLTDFGGI* 840
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g2551 839 MobiDBLite consensus disorder prediction 419 458 - -
Mtr8g2551 839 MobiDBLite consensus disorder prediction 56 87 - -
Mtr8g2551 839 MobiDBLite consensus disorder prediction 190 204 - -
Mtr8g2551 839 Gene3D - 580 642 - -
Mtr8g2551 839 Pfam Homeobox KN domain 594 633 IPR008422 GO:0003677|GO:0006355
Mtr8g2551 839 MobiDBLite consensus disorder prediction 419 451 - -
Mtr8g2551 839 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 107 827 - -
Mtr8g2551 839 MobiDBLite consensus disorder prediction 241 264 - -
Mtr8g2551 839 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 2 107 827 - -
Mtr8g2551 839 SMART prehox3 383 525 IPR006563 -
Mtr8g2551 839 CDD homeodomain 577 638 IPR001356 GO:0003677
Mtr8g2551 839 MobiDBLite consensus disorder prediction 665 735 - -
Mtr8g2551 839 SMART HOX_1 577 641 IPR001356 GO:0003677
Mtr8g2551 839 MobiDBLite consensus disorder prediction 647 664 - -
Mtr8g2551 839 ProSiteProfiles 'Homeobox' domain profile. 574 637 IPR001356 GO:0003677
Mtr8g2551 839 MobiDBLite consensus disorder prediction 143 204 - -
Mtr8g2551 839 MobiDBLite consensus disorder prediction 143 182 - -
Mtr8g2551 839 MobiDBLite consensus disorder prediction 273 292 - -
Mtr8g2551 839 MobiDBLite consensus disorder prediction 31 110 - -
Mtr8g2551 839 MobiDBLite consensus disorder prediction 225 264 - -
Mtr8g2551 839 SUPERFAMILY Homeodomain-like 579 644 IPR009057 -
Mtr8g2551 839 Pfam Associated with HOX 388 524 IPR006563 -
Mtr8g2551 839 MobiDBLite consensus disorder prediction 647 735 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g2551 Mtr-Chr8 35927218 35936244 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g2551 799 839 Homeobox Transcription Factor Family AT2G23760 69.048 1.18e-10 63.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Mtr8g2551 POX 1.3e-51 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g2551 - - mtr:MTR_8g078480 1427.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g2551 8 35927218 35936244 Mtr8g2551 8 35927218 35936244 ECH
Mtr5g0724 5 7066699 7075803 Mtr8g2551 8 35927218 35936244 ECH
Mtr5g0724 5 7066699 7075803 Mtr8g2551 8 35927218 35936244 PCT