Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g2550 ATGGGCTGGCTTACCAAGTTTCTAAAAGGTTCGAACCATAAACATTCAGGACGAGGATACACTGGGAAATATGGACACGACAGAGATTCGGATAATCATGATAATGCAGCGGATGATTTGAATGATTTTGAGAGAGAAGAAATTGATCGTGCAATTGCGATCTCTCTTTCAGAGGTTTCAGAGGAAGATCATAAAGGGAAAAAAGTTATTGAAGAAGATTCTGAATCTGAAGACGATGAGTTGTGTCCACTTGATGACGAGGAAGATGACCATGTTGGTGATGTTGAACAAGATGAAGAGGACCATGTTGCTAAAATTCAACAGGAAGAAGACGAAAGTCTTGATGAAGTTCAACTTGAGGAAGATGAACAACTTGCCAGGGCAATTCAAGAAAGTTTGAGCATTGATTCATCTCCTCCATCTCAGACTGATTCTATATTTCAACCGTTTACAAACCTCTTTTCACCTGTATACAGAATCTGCGCTGGATGCAATGTCGAGATTGGGCATGGAAGGTTTTTGAGTTGCATGGGAGCTGTATGGCATCCAGAATGTTTTTGTTGCCATGCTTGCAAACTTCCAATCACTGATTACGAGTATTCCATGTCTGGGAATCGTCCTTACCATAAATCATGCTATAAGGAGCTGCATCACCCAAGGTGTGATGTTTGCAAGATCTTTATCCCACAAAATTCAGCTGGTCTCATTGAGTATAGAGCACATCCTTTCTGGCTACAAAAATACTGTCCATCACACGAGCGCGATGGTACTCCTCGTTGTTGTAGCTGTCAGAGAATGGAGTCAACGGACACAAAGTATCTGTTGCTTGATGACGGTCGAAAGCTGTGTCTTGAGTGTCTCGATTCGGCTATTATGGATACTCATGAATGCCAACCTCTCTATCTTGAAATACAAGAATTTTATGAAGGTTTGCATATGAAAATAGAGCAGCAAATTCCTATGCTTTTGGTTGAGAGACAAGCACTGAATGAAGCGATGGAGGGCGAAAAGAATGGTCATAATCACCATTTACCTGAAACCAGAGGACTTTGCTTGTCAGAAGAGCAAACTGTCCCCACTATTTTAAGGAGACCAAGTATAGGAGCAGGCTATCGTGTCATAGATATGATAACTGAGCCTTTTAGGCTCATACGTCGATGTGAAGTGACAGCCATACTTGTTTTGTATGGCCTTCCTAGGTTATTGACAGGATCAATCCTAGCTCATGAAATGATGCATGCTTGGCTTAGACTTAAAGGCTATGGAAATCTGAGGCCTGAAGTTGAAGAAGGAATATGCCAAGTCTTGGCTCATATGTGGTTAGATTCAGAGATCTATTCCGGCTCTGGAAGTGAAGAAGCATCATCATCTTCGTCTTCATCTTCGTCGTCTTCATCATCACCTTCCTCTACATCTTCAAAGAAGGGTAAACGGTCCGATTTTGAGAAGGAACTTGGTAAATTTTTTAAACACCAGATTGAGACCGATAGCTCACCAGCCTATGGAGATGGATTTAGAGAGGGTAACCAGGCAGTGCTCAAGTATGGGCTTAGACGGACTCTTGACCATATCCGAATCACCGGAAGTTTTCCATAA 1596 0.4198 MGWLTKFLKGSNHKHSGRGYTGKYGHDRDSDNHDNAADDLNDFEREEIDRAIAISLSEVSEEDHKGKKVIEEDSESEDDELCPLDDEEDDHVGDVEQDEEDHVAKIQQEEDESLDEVQLEEDEQLARAIQESLSIDSSPPSQTDSIFQPFTNLFSPVYRICAGCNVEIGHGRFLSCMGAVWHPECFCCHACKLPITDYEYSMSGNRPYHKSCYKELHHPRCDVCKIFIPQNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCQRMESTDTKYLLLDDGRKLCLECLDSAIMDTHECQPLYLEIQEFYEGLHMKIEQQIPMLLVERQALNEAMEGEKNGHNHHLPETRGLCLSEEQTVPTILRRPSIGAGYRVIDMITEPFRLIRRCEVTAILVLYGLPRLLTGSILAHEMMHAWLRLKGYGNLRPEVEEGICQVLAHMWLDSEIYSGSGSEEASSSSSSSSSSSSSPSSTSSKKGKRSDFEKELGKFFKHQIETDSSPAYGDGFREGNQAVLKYGLRRTLDHIRITGSFP* 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g2550 531 PANTHER TRANSCRIPTION FACTOR INTERACTOR AND REGULATOR LIM FAMILY-RELATED 1 531 - -
Mtr8g2550 531 CDD LIM_DA1 161 213 - -
Mtr8g2550 531 MobiDBLite consensus disorder prediction 1 42 - -
Mtr8g2550 531 MobiDBLite consensus disorder prediction 73 92 - -
Mtr8g2550 531 PANTHER PROTEIN DA1-RELATED 2 1 531 IPR045218 -
Mtr8g2550 531 MobiDBLite consensus disorder prediction 54 72 - -
Mtr8g2550 531 ProSiteProfiles LIM domain profile. 159 219 IPR001781 -
Mtr8g2550 531 Pfam Protein DA1 310 526 IPR022087 -
Mtr8g2550 531 Coils Coil 103 123 - -
Mtr8g2550 531 SMART uim 43 62 IPR003903 -
Mtr8g2550 531 SMART uim 120 139 IPR003903 -
Mtr8g2550 531 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 120 139 IPR003903 -
Mtr8g2550 531 MobiDBLite consensus disorder prediction 451 474 - -
Mtr8g2550 531 MobiDBLite consensus disorder prediction 20 42 - -
Mtr8g2550 531 Pfam LIM domain 161 215 IPR001781 -
Mtr8g2550 531 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 156 186 - -
Mtr8g2550 531 ProSitePatterns LIM zinc-binding domain signature. 161 195 IPR001781 -
Mtr8g2550 531 MobiDBLite consensus disorder prediction 54 92 - -
Mtr8g2550 531 Gene3D Cysteine Rich Protein 155 219 - -
Mtr8g2550 531 MobiDBLite consensus disorder prediction 451 479 - -
Mtr8g2550 531 SMART lim_4 160 212 IPR001781 -
Mtr8g2550 531 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 188 243 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g2550 Mtr-Chr8 35877949 35882344 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Mtr8g2550 DA1-like 3.6e-104 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g2550 - - gmx:100806605 855.514
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g2550 8 35877949 35882344 Mtr8g2550 8 35877949 35882344 ECH
Mtr5g0726 5 7102638 7114672 Mtr8g2550 8 35877949 35882344 PCT