Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g2547 ATGGTAACATTTTTTACTACAAATGTTAGTTCAGCAAAGAAATCTGAGATAGAAGGAATGGAAATGAATGTAATTGATCAATGTTGGAGATTTAATCCTGAATGGAGGAAACATCGACAACAACTTGCTAATTGCTCGGTGGGATATGCGGGAAAAATGACAAACAACATTGGTAAAGACTTAATCCATTATAAAGTTACCGATCACAGTGACCACCCTTTAAATCCAAGACCTGGAACCTTGAGATATGGTGCTTCTAAGATTCAAGGTAAAGTTTGGATCACATTCCAAAGGGATATGGACATTAAGCTTGTGAAACCCCTTCTCATCAGTAGTTTCACCACCATTGATGGTCGAGGTGTCAATGTCCACATTGCAGATAATGCTTGTTTGATGATTTATAAGGCAACCAACATAATCATCCACGGAATCAGGATTCATCATTGTCAACCTCAAGCTCCTGGAATGGTGATGGGTGCCGATGGAAAGATAATATCATTAGGTCAAGTCGATGGAGATGCAATCAGATTGGTTTCTGCTTCAAAAATTTGGATTGATCATAGCACACTTTTTGATTGTCAAGATGGTCTTTTAGATGTTACACGAGGTTCCACAGATATAACAATCTCCAACAACTGGTTTAGAGAGCAAAATAAAGTTATGCTACTTGGTCATGATGATGGATTTGTGAGAGACAAAAACATGAAAGTCACCGTTATATACAACTATTTTGGACCTAATTGCCATCAACGCATGCCTAGAATTCGTCATGGATATGCACATGTTGTGAATAATTTGTACATGGGATGGGTGCAATATGCAATAGGTGGAAGTATGGAACCAAGCCTTAAAAGTCAATCAAACCTCTTCATAGCACCCGCCACAGGGAAAAAGGAGGTTACATGGAGAAAAAGTAGCAATGAAATTGGAGATACGTGGGAATTTTATTCAGTTGGGGACGCTTTTGAAAATGGAGCATCCTTCGTTGAAACAAAAGGTGGACAAGTGATAAAACCAAATTATAACCCTGAACAAAATTTTAAAGTTGTTGATGCCAAATTTGTAAGATCATTAACAAGATCATCTGGGGTATTGCAATGTAGTAAAACATCAATATGTTGA 1122 0.3761 MVTFFTTNVSSAKKSEIEGMEMNVIDQCWRFNPEWRKHRQQLANCSVGYAGKMTNNIGKDLIHYKVTDHSDHPLNPRPGTLRYGASKIQGKVWITFQRDMDIKLVKPLLISSFTTIDGRGVNVHIADNACLMIYKATNIIIHGIRIHHCQPQAPGMVMGADGKIISLGQVDGDAIRLVSASKIWIDHSTLFDCQDGLLDVTRGSTDITISNNWFREQNKVMLLGHDDGFVRDKNMKVTVIYNYFGPNCHQRMPRIRHGYAHVVNNLYMGWVQYAIGGSMEPSLKSQSNLFIAPATGKKEVTWRKSSNEIGDTWEFYSVGDAFENGASFVETKGGQVIKPNYNPEQNFKVVDAKFVRSLTRSSGVLQCSKTSIC* 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g2547 373 PANTHER PECTATE LYASE 3 370 - -
Mtr8g2547 373 SUPERFAMILY Pectin lyase-like 17 367 IPR011050 -
Mtr8g2547 373 SMART amb_all 99 296 IPR002022 -
Mtr8g2547 373 Gene3D - 22 366 IPR012334 -
Mtr8g2547 373 PRINTS Pollen allergen Amb family signature 70 95 IPR018082 -
Mtr8g2547 373 PRINTS Pollen allergen Amb family signature 107 123 IPR018082 -
Mtr8g2547 373 PRINTS Pollen allergen Amb family signature 171 192 IPR018082 -
Mtr8g2547 373 PRINTS Pollen allergen Amb family signature 251 270 IPR018082 -
Mtr8g2547 373 PRINTS Pollen allergen Amb family signature 273 292 IPR018082 -
Mtr8g2547 373 PRINTS Pollen allergen Amb family signature 313 337 IPR018082 -
Mtr8g2547 373 PRINTS Pollen allergen Amb family signature 344 367 IPR018082 -
Mtr8g2547 373 Pfam Pectate lyase 110 290 IPR002022 -
Mtr8g2547 373 PANTHER PECTATE LYASE 18-RELATED 3 370 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g2547 Mtr-Chr8 35858821 35860592 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g2547 53 300 Polysaccharide Lyase AT5G09280 69.355 3.77e-137 391
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g2547 K01728 - gmx:100811216 658.677