Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g2546 ATGAATGTGATCGATCAATGTTGGAGATTTAATCCTGAATGGAGGAAACATCGACAACAACTTGCTAATTGCTCGGTGGGATATGCGGGAAAAATGACAAACAACATTGGTAAAGACTTAATCCATTATAAAGTTACCGATCACAGTGATCACCCTTTAAATCCAACACCTGGAACCTTGAGATATGGAGCTTCTAAGATTCAAGGTAAAGTTTGGATCACATTCCAAAGGGATATGGACATTAAGCTTGTGAAACCCCTTCTCATCAGTAGTTTCACCACCATTGATGGTCGAGGCGTCGATATCCACATTGCAGATAATGCGTGTTTGATGATATATAAGGAAACCAACATAATCATCCACGGAATAAGGGTTCATCATTGTCGACCTCAAGCTCCTGGAATGGTGATGGGTTCCGATGGAAAGATAATTGCATTAGGTCAAGTTGATGGAGATGCAATTAGATTGGTTTCTGCTTCAAAAATTTGGATTGATCATAGCACACTTTATGATTGTCAAGATGGTCTTTTAGATGTTACACGAGGTTCCACTGATATAACAATCTCCAACAATTGGTTTAGAGAGCAAAATAAAGTTATGCTTCTTGGTCACGATGATGGATTTGTGAGAGACAAAAACATGAAAGTCACCGTTATATACAACTATTTTGGACCTAATTGCCACCAGCGCATGCCTAGAATTCGTCATGGATATGCACATGTTGCAAATAATCTGTACATGGGATGGGTGCAATATGCAATAGGTGGAAGTATGGAACCAAGCCTTAAAAGCCAATCAAACCTCTTCATAGCACCAACCACAGGAAAAAAGGAGGTTACATGGAGGAAAAGTAGTAACGGAATTGGAGATACATGGGAATTTTATTCGGTTGGAGACGCTTTTGAAAATGGAGCATCCTTCATTGAAACAAAAGGTGGACAAGTGATAAAACCAAATTATAAACTTGAACAAAATTTTAAAGTTGTTGATGCCAAATTTGTAAGATCATTGACAAGATCATCTGGTGTATTGCAATGTAGTAAAACCTCAATATGTTGA 1059 0.3815 MNVIDQCWRFNPEWRKHRQQLANCSVGYAGKMTNNIGKDLIHYKVTDHSDHPLNPTPGTLRYGASKIQGKVWITFQRDMDIKLVKPLLISSFTTIDGRGVDIHIADNACLMIYKETNIIIHGIRVHHCRPQAPGMVMGSDGKIIALGQVDGDAIRLVSASKIWIDHSTLYDCQDGLLDVTRGSTDITISNNWFREQNKVMLLGHDDGFVRDKNMKVTVIYNYFGPNCHQRMPRIRHGYAHVANNLYMGWVQYAIGGSMEPSLKSQSNLFIAPTTGKKEVTWRKSSNGIGDTWEFYSVGDAFENGASFIETKGGQVIKPNYKLEQNFKVVDAKFVRSLTRSSGVLQCSKTSIC* 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g2546 352 Pfam Pectate lyase 89 269 IPR002022 -
Mtr8g2546 352 SUPERFAMILY Pectin lyase-like 2 345 IPR011050 -
Mtr8g2546 352 PANTHER PECTATE LYASE 1 349 - -
Mtr8g2546 352 SMART amb_all 78 275 IPR002022 -
Mtr8g2546 352 PANTHER PECTATE LYASE 18-RELATED 1 349 IPR045032 GO:0030570
Mtr8g2546 352 Gene3D - 1 345 IPR012334 -
Mtr8g2546 352 PRINTS Pollen allergen Amb family signature 49 74 IPR018082 -
Mtr8g2546 352 PRINTS Pollen allergen Amb family signature 86 102 IPR018082 -
Mtr8g2546 352 PRINTS Pollen allergen Amb family signature 150 171 IPR018082 -
Mtr8g2546 352 PRINTS Pollen allergen Amb family signature 230 249 IPR018082 -
Mtr8g2546 352 PRINTS Pollen allergen Amb family signature 252 271 IPR018082 -
Mtr8g2546 352 PRINTS Pollen allergen Amb family signature 292 316 IPR018082 -
Mtr8g2546 352 PRINTS Pollen allergen Amb family signature 323 346 IPR018082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g2546 Mtr-Chr8 35851857 35853546 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g2546 32 279 Polysaccharide Lyase AT5G09280 68.952 3.74e-136 387
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g2546 K01728 - gmx:100811216 637.491