Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g2544 ATGAATGTGATTGATCAATGTTGGAGATTCAATCCTAAATGGAGGAAACATCGACAACAACTTACCGTTTGCTCAGTGGGATATGTAGGGAAAATGACAAACAACATAGGCAAGGACTTAATCCATTATACAGTTACCGATCCTAGGGACCACCCTTTAAATCCAGCACCTGGAACCTTGAGATATGAAGCATCTAGGATTCAAGGCAAAGTTTGGATCACACTTAAACGGAACATGAACATTAAGCTTGTGAGACCCCTTCTCATCAGTAGTTTCACCACCATTGACGGTCGAGGCGTCGATGTCCACATTGCAGATAATGCGTGCCTGATGATATATAAGGCAACCAACATAATCATCCACAGAATTAGGGTTCATCATTGTCGACCTCAAGCTCCTGGAATGATGATGGGTCCCGATGGAAAGATAATTTCATTAGGTCAAGTTGATGGAGGTGCAATCAGATTGGTTTCTGCTTCAGAAATTTGGATCGATCATAACACACTTTATAATTGTCAAGATGGTCTTCTAGATGTTACACGAGGTTCCACTGATATAACGATATCCAACAATTGGTTTAGAGAGCAAAATAAAGTTATGCTTCTTGGTCACGATGATGAATTTGTGAGAGACAAAAACATGAAAGTCACCGTTGTATACAACTATTTTGGACCTAATTGCCACCAGCGCATGCCTAGAATTCGTCATGGATACGCACATGTTGCAAATAATCTGTACATGGGATGGGTGCAATATGCAATAGGTGGAAGTATGGAATCAAGCCTTAAAAGTCAATCAAACCTCTTCATAGCACATGCAACCGGGAAAAAGGAGGTGACATGGAGAAAAAGTAGTAATGGAATTGGAGATACATGGAAATTTTATTCAGTTGGGGACGCTTTTGAAAATGGAGCATCCTTCGTGGAAACAAAAGGTGGACAAGTGACTAAACCAAATTATAGCCATGAACAGAATTTTAAAGTTGTTGATGCCAAATATGTAAGATCATTGACAAGTTCATCCGGCGTGTTACAATGCAGTAAAACCTCAATATGCTGA 1059 0.3994 MNVIDQCWRFNPKWRKHRQQLTVCSVGYVGKMTNNIGKDLIHYTVTDPRDHPLNPAPGTLRYEASRIQGKVWITLKRNMNIKLVRPLLISSFTTIDGRGVDVHIADNACLMIYKATNIIIHRIRVHHCRPQAPGMMMGPDGKIISLGQVDGGAIRLVSASEIWIDHNTLYNCQDGLLDVTRGSTDITISNNWFREQNKVMLLGHDDEFVRDKNMKVTVVYNYFGPNCHQRMPRIRHGYAHVANNLYMGWVQYAIGGSMESSLKSQSNLFIAHATGKKEVTWRKSSNGIGDTWKFYSVGDAFENGASFVETKGGQVTKPNYSHEQNFKVVDAKYVRSLTSSSGVLQCSKTSIC* 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g2544 352 SMART amb_all 78 275 IPR002022 -
Mtr8g2544 352 Gene3D - 1 345 IPR012334 -
Mtr8g2544 352 PRINTS Pollen allergen Amb family signature 49 74 IPR018082 -
Mtr8g2544 352 PRINTS Pollen allergen Amb family signature 86 102 IPR018082 -
Mtr8g2544 352 PRINTS Pollen allergen Amb family signature 150 171 IPR018082 -
Mtr8g2544 352 PRINTS Pollen allergen Amb family signature 230 249 IPR018082 -
Mtr8g2544 352 PRINTS Pollen allergen Amb family signature 252 271 IPR018082 -
Mtr8g2544 352 PRINTS Pollen allergen Amb family signature 292 316 IPR018082 -
Mtr8g2544 352 PRINTS Pollen allergen Amb family signature 323 346 IPR018082 -
Mtr8g2544 352 PANTHER PECTATE LYASE 1 349 - -
Mtr8g2544 352 Pfam Pectate lyase 89 269 IPR002022 -
Mtr8g2544 352 PANTHER PECTATE LYASE 18-RELATED 1 349 IPR045032 GO:0030570
Mtr8g2544 352 SUPERFAMILY Pectin lyase-like 41 343 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g2544 Mtr-Chr8 35842482 35844174 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g2544 32 279 Polysaccharide Lyase AT5G09280 66.935 9.92e-131 374
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g2544 K01728 - gmx:100811216 608.601