Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g2530 ATGGTTGATTTAGACAATGTTTCCACAGCTTCAGGTGAAGCTAGCATCTCTTCCTCTGGTAATAACAATATTCAATCACCAATTCCAAAACCCACCAAGAAAAAGAGAAATCTCCCAGGAATGCCAGATCCAGAAGCAGAGGTGATTGCTCTGTCACCAACAACGTTGTTAGCTACAAACAGATTTGTGTGTGAAATATGTAACAAAGGGTTTCAAAGAGATCAGAATCTTCAACTACATAGAAGAGGACATAATCTACCATGGAAACTGAGACAAAGATCAAGTAAAGAAATTAGGAAAAGGGTTTATGTTTGTCCTGAACCTACTTGTGTTCATCATGATCCTTCTAGAGCTTTAGGTGATTTAACTGGGATAAAAAAGCACTTTTGTAGAAAACATGGTGAGAAAAAGTGGAAATGTGAGAAATGTTCTAAGAAATATGCTGTTCAATCTGATTGGAAAGCTCACTCTAAAGTTTGTGGTTCTAGAGAGTATAAATGTGATTGTGGAACCGTTTTTTCCAGGAGGGATAGTTTTATCACACATAGAGCTTTTTGTGATGCGTTGGCAGAGGAGAATGCAAAATCTCAGAATCAAGCTGTTGGGAAAGCTAATTCAGAATCTGATTCAAAGGTTTTGACCGGTGATTCGTTGCCGGCGGTGATTACTACTACTGCTGCTGCTGCTGCTACTACTCCTCAATCAAATAGTGGTGTGTCCTCTGCTTTGGAGACTCAGAAGCTAGATTTGCCAGAAAATCCACCACAAATCATAGAGGAACCGCAAGTTGTTGTTACTACTACTGCTAGTGCTTTAAATGCGAGTTGTAGCAGCAGTACTAGCTCAAAAAGCAACGGCTGTGCCGCTACCAGCACTGGCGTGTTTGCGAGCTTGTTTGCTTCATCAACAGCTTCAGCTTCTGCGAGTCTCCAACCTCAGGCACCGGCGTTCAGTGACCTAATTAGGTCCATGGGATGTACAGATCCTCGTCCTACAGATTTCTCAGCACCTCCATCGTCCGAGGCGATTTCTCTTTGCCTTTCGACTAGTCATGGATCATCAATTTTCGGAACAGGAGGGCAGGAGTGTCGCCAATACGTGCCAACACATCAGCCGCCCGCGATGTCTGCCACTGCATTACTTCAAAAAGCAGCTCAAATGGGCGCTGCTGCAACAAACGCCTCTCTGCTTCGTGGGCTTGGAATTGTGTCGTCTTCTGCTTCTACTTCATCTGGTCAACAAGATAGCCTGCATTGGGGTCTCGGACCAATGGAACCAGAGGGTTCTAGTTTAGTTTCAGCAGGACTTGGACTAGGTCTTCCTTGTGACGCAGATTCTGGACTAAAGGAATTGATGTTGGGGACTCCGTCAATGTTTGGTCCTAAGCAGACAACTCTTGATTTTCTAGGATTGGGGATGGCTGCTGGTGGCAGTGCCGGTGGAGGTTTGTCTGCACTTATCACATCAATTGGCGGAGGCAGTGGTTTGGATGTTACCGCAGCAGCCGCATCCTTTGGTAATGGAGAGTTCTCTGGCAAAGATATCGGAAGGAGTTCGTGA 1560 0.4487 MVDLDNVSTASGEASISSSGNNNIQSPIPKPTKKKRNLPGMPDPEAEVIALSPTTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRSSKEIRKRVYVCPEPTCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKKYAVQSDWKAHSKVCGSREYKCDCGTVFSRRDSFITHRAFCDALAEENAKSQNQAVGKANSESDSKVLTGDSLPAVITTTAAAAATTPQSNSGVSSALETQKLDLPENPPQIIEEPQVVVTTTASALNASCSSSTSSKSNGCAATSTGVFASLFASSTASASASLQPQAPAFSDLIRSMGCTDPRPTDFSAPPSSEAISLCLSTSHGSSIFGTGGQECRQYVPTHQPPAMSATALLQKAAQMGAAATNASLLRGLGIVSSSASTSSGQQDSLHWGLGPMEPEGSSLVSAGLGLGLPCDADSGLKELMLGTPSMFGPKQTTLDFLGLGMAAGGSAGGGLSALITSIGGGSGLDVTAAAASFGNGEFSGKDIGRSS* 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g2530 519 ProSitePatterns Zinc finger C2H2 type domain signature. 64 84 IPR013087 -
Mtr8g2530 519 Gene3D Classic Zinc Finger 116 197 - -
Mtr8g2530 519 MobiDBLite consensus disorder prediction 8 30 - -
Mtr8g2530 519 ProSiteProfiles Zinc finger C2H2 type domain profile. 62 84 IPR013087 -
Mtr8g2530 519 SMART c2h2final6 138 158 IPR013087 -
Mtr8g2530 519 SMART c2h2final6 103 133 IPR013087 -
Mtr8g2530 519 SMART c2h2final6 62 84 IPR013087 -
Mtr8g2530 519 PANTHER ZINC FINGER PROTEIN GAI-ASSOCIATED FACTOR 1 2 518 - -
Mtr8g2530 519 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 2 518 - -
Mtr8g2530 519 Gene3D Classic Zinc Finger 42 107 - -
Mtr8g2530 519 Pfam Zinc finger, C2H2 type 62 84 IPR013087 -
Mtr8g2530 519 SUPERFAMILY beta-beta-alpha zinc fingers 61 158 IPR036236 -
Mtr8g2530 519 MobiDBLite consensus disorder prediction 1 45 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g2530 Mtr-Chr8 35658397 35661525 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g2530 2 517 IDZ Gene Family AT3G50700 56.262 0.0 514
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mtr8g2530 zf-C2H2 0.0053 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g2530 K25869 - gmx:100806404 685.256
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g2530 8 35658397 35661525 Mtr8g2530 8 35658397 35661525 ECH