Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g2518 ATGTCATCGAAAAGCTTAGGCCGCAAACTCAAGGGGATAAAAAATGGAATAGGTAGCATATGGAGCAAGCATATGTTCTGTCGGTCAAATTCCCACGTTGCTCTGGATGTAACTCCAATTGAACCTATTCAACAGGGACAATGGGCAAGTCTACCACCTGAATTGCTTTTGGACATAATCCGAAGGGTTGAAAAGAGTGAGACATTTTGGCCTGCACGTGCTGTTGTTATCTTTTGTGCTTCAGTATGTAAATCATGGAGGTCCGCCACATTAGAGATCGTCAAGACTCCTCAACAATGTGGAAGGATCACATTTCCTATTTCAGTGAAGCAGCCCGGTCCCTGTGATTATCCGATCCAGTGCTTTATTAGGAGGAACAAAAGAACGTCTACATTCCTGTTGTACTTAGGCTTGGAGCCATCGAATAATGAGGGTAATAAGTTGTTATTAGCTGCCAAAAAGATAAGAAGGTCCGAATTTGTCGTATCCTTAGCAGCAGACGATTTTTCTCAAGCCAGCAACAAATTTGTTGGTAAAGTAAGGTCCAATTTTTGGTGCACCAAGTTCTCTATATACGACAGTCAACCACCAGATAATGCTGCAGTTCAATCAAATTGTCGACCAAGCGGGATATTGAATTCTAAGCAAGTGTCACCTAGAAGAGCTCCAGCATGTAGCCATCTTGTTGGCACCGTTTCCTATGAGGTGGTGATCACTACTGATACACCACGAAAGATCAACTGCATCATGAACTCGATACCGACGTCAGCTCTTTATGAAGGGGGAAACACTCCGACTCCAACATCGTTACCTCCAATATTTGATATACCTTTTTCTTGTTCACCAGCACTTAAAGAAAAAAGTCCAATGAAAGGTTCATACCATGGAAGCCTATCGGAGCTACCAGAACTGAGTCAAAGCTCTATCGAGCCCTTGACACTCATAAACATCTCTCGCTCATATTTTGATCAATTGATCCAGTGTCGAGGACGATGCTCCGCGCGCGTGATATCTATAAAGAACTTTCAACTTGGAGCCTCTGTTCATCTGCCTCATAATGTTTCACGGGCGGAGCTAAAGAGGGTAATCTTACAGTTTGCAAAGATTGAAAAAGATCTATTCATCATGGACTACTCTTATCCACTCTCTGCCTTCCAAGCCTTTGCCATTTGCTTGACGTCAATGAGAGCCATGCATTTATGA 1203 0.4298 MSSKSLGRKLKGIKNGIGSIWSKHMFCRSNSHVALDVTPIEPIQQGQWASLPPELLLDIIRRVEKSETFWPARAVVIFCASVCKSWRSATLEIVKTPQQCGRITFPISVKQPGPCDYPIQCFIRRNKRTSTFLLYLGLEPSNNEGNKLLLAAKKIRRSEFVVSLAADDFSQASNKFVGKVRSNFWCTKFSIYDSQPPDNAAVQSNCRPSGILNSKQVSPRRAPACSHLVGTVSYEVVITTDTPRKINCIMNSIPTSALYEGGNTPTPTSLPPIFDIPFSCSPALKEKSPMKGSYHGSLSELPELSQSSIEPLTLINISRSYFDQLIQCRGRCSARVISIKNFQLGASVHLPHNVSRAELKRVILQFAKIEKDLFIMDYSYPLSAFQAFAICLTSMRAMHL* 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g2518 400 SUPERFAMILY Tubby C-terminal domain-like 97 395 IPR025659 -
Mtr8g2518 400 PANTHER TUBBY-RELATED 1 397 - -
Mtr8g2518 400 PANTHER TUBBY-LIKE F-BOX PROTEIN 2 1 397 - -
Mtr8g2518 400 PRINTS Tubby superfamily signature 160 176 IPR000007 -
Mtr8g2518 400 PRINTS Tubby superfamily signature 176 200 IPR000007 -
Mtr8g2518 400 PRINTS Tubby superfamily signature 225 252 IPR000007 -
Mtr8g2518 400 PRINTS Tubby superfamily signature 330 346 IPR000007 -
Mtr8g2518 400 PRINTS Tubby superfamily signature 359 378 IPR000007 -
Mtr8g2518 400 PRINTS Tubby superfamily signature 380 400 IPR000007 -
Mtr8g2518 400 Gene3D Tubby Protein; Chain A 108 395 IPR025659 -
Mtr8g2518 400 Gene3D - 41 98 - -
Mtr8g2518 400 Pfam Tub family 109 395 IPR000007 -
Mtr8g2518 400 Pfam F-box domain 48 93 IPR001810 GO:0005515
Mtr8g2518 400 SUPERFAMILY F-box domain 43 90 IPR036047 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g2518 Mtr-Chr8 35509733 35511701 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g2518 1 395 TUB Transcription Factor Family AT2G18280 49.386 1.12e-114 338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Mtr8g2518 Tub 2.4e-62 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g2518 K19600 - gmx:100805380 482.256