Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g2517 ATGTCATTGAAAAGCATAGTTCAAGAACCCAAGGGAATTAAAAATGGAATATCAAAGCAGGGTCCTGAGAGCGAGCATTTGCTCCATCGGATAGTGTCGCATCTTGCTATGGATTCACTTCCAATTAAACCTCTTCCAAAGGGAGAATGGGAAACTCTACCACGTGAATTGCTTTTGGACATAATCCGTAAGGTTGAAGAAAGTGAGACATCTTGGCCTGCACGTGCTGTTGTTGTCGTCTGTGCTTCAGTATGTAAATCATGGAGGTCCGTCACAAAAGAGATCGTCAAAACTCTTCAGCAATGTGGAAGGATCACATTTCCTATTTCATTGATGCAGCCTGGTCCTCGTTATCATCCGATACATTGCTTTATAAGGAGGAACAGAAGAACTTCTACATTTCTGTTGTATCTGGTGCAGTCGGAGAATAAGAGTACTAAGTTGTTATTAGCTGCCAAAAGGATAAGAAGGTCCAACTTCGTCATATCCTTGGCTGCGGATGATTTTTCTCGAGCAAGCAACAAATATGTTGGTAAACTGAGGTCAAATTTTTGGCGCACCAAGTTCACTATATACGACAGTCAATCTCCATTATTTGATGAAACTCTTTCTTCTTCACCAGCACTGAAGGGAAAACGTCCAACGAAAGATTCATACTTTGCAAGCCTATCAAAGCTACCAGAATTGAGTCGAGGCTCATTCGAGACCTTTATACTAAAAAACAAGGCTCTTAGATGGGATGAGAAGCACAATGGTTGGTGCCCTGACTTCATGGGCCGTGTTAAAGTAGAATCTATGAAAAACTTTGACCTTGTAGCTGTTGTTGATCGATCTCATAATGTTTCTCCAGGAGTGCGAAAATGGCCAATCTTGCAGTTAGGAAGCGCGGATGGGAAAGATATCTTCTTCATGCACTACACTTATCCATTCTCTGCCTTCCAAGCCTTTGCCATCTGCTTGATTTGTTGCATATAA 975 0.4174 MSLKSIVQEPKGIKNGISKQGPESEHLLHRIVSHLAMDSLPIKPLPKGEWETLPRELLLDIIRKVEESETSWPARAVVVVCASVCKSWRSVTKEIVKTLQQCGRITFPISLMQPGPRYHPIHCFIRRNRRTSTFLLYLVQSENKSTKLLLAAKRIRRSNFVISLAADDFSRASNKYVGKLRSNFWRTKFTIYDSQSPLFDETLSSSPALKGKRPTKDSYFASLSKLPELSRGSFETFILKNKALRWDEKHNGWCPDFMGRVKVESMKNFDLVAVVDRSHNVSPGVRKWPILQLGSADGKDIFFMHYTYPFSAFQAFAICLICCI* 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g2517 324 Pfam F-box domain 50 96 IPR001810 GO:0005515
Mtr8g2517 324 Gene3D Tubby Protein; Chain A 108 225 IPR025659 -
Mtr8g2517 324 MobiDBLite consensus disorder prediction 1 21 - -
Mtr8g2517 324 Pfam Tub family 111 203 IPR000007 -
Mtr8g2517 324 Pfam Tub family 235 320 IPR000007 -
Mtr8g2517 324 PANTHER TUBBY-RELATED 213 323 - -
Mtr8g2517 324 PANTHER TUBBY-RELATED 1 200 - -
Mtr8g2517 324 Gene3D - 45 99 - -
Mtr8g2517 324 SUPERFAMILY Tubby C-terminal domain-like 100 320 IPR025659 -
Mtr8g2517 324 SUPERFAMILY F-box domain 45 94 IPR036047 GO:0005515
Mtr8g2517 324 PANTHER TUBBY-LIKE F-BOX PROTEIN 2 213 323 - -
Mtr8g2517 324 PANTHER TUBBY-LIKE F-BOX PROTEIN 2 1 200 - -
Mtr8g2517 324 PRINTS Tubby superfamily signature 160 176 IPR000007 -
Mtr8g2517 324 PRINTS Tubby superfamily signature 176 200 IPR000007 -
Mtr8g2517 324 PRINTS Tubby superfamily signature 308 324 IPR000007 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g2517 Mtr-Chr8 35495171 35496605 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g2517 199 320 TUB Transcription Factor Family AT2G18280 47.541 2.19e-24 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Mtr8g2517 Tub 4e-24 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g2517 K19600 - mtr:MTR_8g077640 642.884