Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g2516 ATGTCATTGAAAATCATAGTCTGCAAACTCAAGGGCATGAAAAATCGACTAGGTAGCATATCAAAGAGTGTTGAGACCAAGCATAGGCTCTGTCGGACAAAGTCCCATGTTGCACTGGATGTAACTCCAATTGAACCTGTTCAACAGGGACAGTGGGCATATCTACCACCTGAATTGCTTTTGGATATAATCCGTAGGGTTGAAGAGAGTGCGACATCTTGGCCTGCCCGTGCCATTGTTGTCTGTTGTGCTTCGGTATGTAAATCGTGGAGGTCCATCACGTTAGAGATTGTCAAGACTCCTCAGCAATGTGGAATGCTTACATTTCCTATTTCATTGAAGCAGCCCGGTCCCAGTGATTATCGGATACAGTGCTTTATTAGGAGGAACAAAAGAACGTCTACATTCCTGTTGTACTTAGGTTTGGAGCCATCGAAGAATGAGAGTAATAAGTTGTTATTAGCTGCCAAAAAGATAAGGTCCGACTTTGTCATATCCTTGGCAACAGACGATTTTTGTCAAGCCAGCAACAAATATGTTGGTAAAGTCAGGTTTGATTTCGCGGGCATCGATTTCACTATATATGACAGTCAACCTCCACATGATGCTGCAGTTCAACCAAATTGTCGACCAAGTGGAATGTTTAATTCTAAGCCAGTGTCACCAAGAAGAGTTCAAGCATGTAGCCATCTTGTTAGCACCATTTCCTATAAGTTTTTCTGGAAATCGCCAAGAAGAATGTACTGCATCATGAACTCTAACATCGTTACCACTATTCAGGAAGGGGGAAACACCACGTCTCCAACATTGTTACCTAAAATATTTGATGAACCTTTTTCTCCTTCACCAGAGCTACTAGGACTGAGCCAAGGCTCGATCCAACCCTTGTTGCTCAAAAGCAAGGATTACATGAGGGATGAGCAGCGAAAGTGTTGGTGTTTAGACTACATGGGTCGTGCAAAAGAAAATGCAATAGTGCTCTCTACAAAGAACTTTCAACTTGTAGAAGATGTTGTTGATCCATCCCATAATGCTTCTCCGGTAGAGCGAGAAAGGGTAGTCTTGCAGTTAGGAAAGATCGGAAAAGACATATTCATCATGGACTACTCTTACCCACTCTCTGCCTTCCAAGCCTTCGCCATCTGCTTGACGCAAATGAGAGTGTAG 1167 0.4302 MSLKIIVCKLKGMKNRLGSISKSVETKHRLCRTKSHVALDVTPIEPVQQGQWAYLPPELLLDIIRRVEESATSWPARAIVVCCASVCKSWRSITLEIVKTPQQCGMLTFPISLKQPGPSDYRIQCFIRRNKRTSTFLLYLGLEPSKNESNKLLLAAKKIRSDFVISLATDDFCQASNKYVGKVRFDFAGIDFTIYDSQPPHDAAVQPNCRPSGMFNSKPVSPRRVQACSHLVSTISYKFFWKSPRRMYCIMNSNIVTTIQEGGNTTSPTLLPKIFDEPFSPSPELLGLSQGSIQPLLLKSKDYMRDEQRKCWCLDYMGRAKENAIVLSTKNFQLVEDVVDPSHNASPVERERVVLQLGKIGKDIFIMDYSYPLSAFQAFAICLTQMRV* 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g2516 388 Gene3D Tubby Protein; Chain A 112 386 IPR025659 -
Mtr8g2516 388 Pfam F-box domain 54 98 IPR001810 GO:0005515
Mtr8g2516 388 Pfam Tub family 113 386 IPR000007 -
Mtr8g2516 388 PANTHER TUBBY-LIKE F-BOX PROTEIN 2 1 386 - -
Mtr8g2516 388 Gene3D - 45 99 - -
Mtr8g2516 388 SUPERFAMILY Tubby C-terminal domain-like 101 385 IPR025659 -
Mtr8g2516 388 SUPERFAMILY F-box domain 47 95 IPR036047 GO:0005515
Mtr8g2516 388 PANTHER TUBBY-RELATED 1 386 - -
Mtr8g2516 388 PRINTS Tubby superfamily signature 163 179 IPR000007 -
Mtr8g2516 388 PRINTS Tubby superfamily signature 179 203 IPR000007 -
Mtr8g2516 388 PRINTS Tubby superfamily signature 226 253 IPR000007 -
Mtr8g2516 388 PRINTS Tubby superfamily signature 298 315 IPR000007 -
Mtr8g2516 388 PRINTS Tubby superfamily signature 350 369 IPR000007 -
Mtr8g2516 388 PRINTS Tubby superfamily signature 371 388 IPR000007 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g2516 Mtr-Chr8 35488819 35490565 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g2516 1 384 TUB Transcription Factor Family AT2G18280 49.136 1.60e-116 343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Mtr8g2516 Tub 2.5e-65 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g2516 K19600 - gmx:100805380 485.723