Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g2508 ATGATGCATCATTGTTGTAGTAGCTCTCAACAAGGTCACATAATGGGAGGAACATGCACATGTGGTATGTTTCATCCTCAAACAAATTCTAACTACTCTTTGATTTACTCTAACTACCAACAACATGATCATTGCGATTTTGACCCTTACTCATACACTACTCCATCTTCTTCTTCTTCTTCTTCTGTTGATTGCACACTCTCCCTTGCTACCCCTTCCACACGTTTATCTGAAGACCAAGATAAACGAAACCGTCGCTCTTCTCTTGCTAATTTTTTCTGTACCAAATCTTCAAACACTAAACATAATTCTCAATCTCAATCCAAGTCAAACAATATTGGTAGTAACTCTAACAATGATTCTCTTCTTGCTCGTCGTTGTGCTAGCTGTGACTCCACTTCTACACCCCTTTGGAGGAATGGTCCTCGTGGCCCTAAGTCACTATGCAATGCTTGTGGGATTAGATACAAGAAGGAAGAGAGAAGAGCGAACGCCGCGGTTGCCACGACAGCTGCGACTAACGGTGGCATAATGGAGTCAGGAAACTTCTACAGTAACAACAACAACAACAATTCATGGTACTCACAACCACAGAGTCAAATGTATGGCAATGAGCTACGTTTCATGGATGATTCAGATGCAGAATCAGAAAATGGCATTCCTAATTTCCTTTCTTGGAGACTCAACACAAGTCTTGTTCACGATTACACAAGATGA 717 0.4128 MMHHCCSSSQQGHIMGGTCTCGMFHPQTNSNYSLIYSNYQQHDHCDFDPYSYTTPSSSSSSSVDCTLSLATPSTRLSEDQDKRNRRSSLANFFCTKSSNTKHNSQSQSKSNNIGSNSNNDSLLARRCASCDSTSTPLWRNGPRGPKSLCNACGIRYKKEERRANAAVATTAATNGGIMESGNFYSNNNNNNSWYSQPQSQMYGNELRFMDDSDAESENGIPNFLSWRLNTSLVHDYTR* 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g2508 238 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 124 166 - -
Mtr8g2508 238 ProSitePatterns GATA-type zinc finger domain. 127 152 IPR000679 GO:0006355|GO:0043565
Mtr8g2508 238 SMART GATA_3 121 176 IPR000679 GO:0006355|GO:0043565
Mtr8g2508 238 MobiDBLite consensus disorder prediction 96 117 - -
Mtr8g2508 238 PANTHER GATA TRANSCRIPTION FACTOR 18 1 235 - -
Mtr8g2508 238 CDD ZnF_GATA 126 158 IPR000679 GO:0006355|GO:0043565
Mtr8g2508 238 ProSiteProfiles GATA-type zinc finger domain profile. 121 157 IPR000679 GO:0006355|GO:0043565
Mtr8g2508 238 PANTHER GATA TRANSCRIPTION FACTOR 18 1 235 IPR044272 GO:0003700|GO:0009908
Mtr8g2508 238 Pfam GATA zinc finger 127 161 IPR000679 GO:0006355|GO:0043565
Mtr8g2508 238 Gene3D - 123 180 IPR013088 GO:0006355|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g2508 Mtr-Chr8 35425992 35427173 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g2508 20 238 C2C2-Gata Transcription Factor Family AT3G50870 39.116 3.06e-45 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Mtr8g2508 GATA 7.5e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g2508 - - ccaj:109801476 228.794
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g2508 8 35425992 35427173 Mtr8g2508 8 35425992 35427173 ECH
Mtr5g0785 5 7742982 7744343 Mtr8g2508 8 35425992 35427173 PCT
Mtr8g2508 8 35425992 35427173 Mtr5g0932 5 9221703 9230221 PCT