Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g2492 ATGGGAACTGATAGTTGTAAAGTGGTAGAGACATTACCAGATCCCCGCTCTTTTAAGGTACATCGTAGACTCTGCACAGAACTCAAGAAATTAGTTGATAGGGTGTTAAGGATCTTTCCACAGATAGAGGAAGCGCGCCCTCGGTCCTCATCAGGAATACCGGCTCTGGTTTTGCTTACCAGTACAGTTGATAAAGCCAAACAACTTCTGCAAAATTGCTCTGATTCTAGTGTACTTTATCTGGCAATAACAGGGGAGTCAATTCTCTCAAAATGCCAAAAGTCAAGAAAGTCATTAGAGAAAAGCTTAGTCCAGATTCAAGATATAGTTCCTGTTATGTTGGCTGCAGAGATTTCTCGAATAGTTGATGATCTTAGGCGTGTCACCTTTGTCCTGGATTCTGCTGAAGAAGAGGCTGGGAGGGTTATGAGAGAATTGCTCCAACAAGGTCCTTCAACCGCAGATAACGATTCAAAGGAAAACTCAGACGTAAAATCTCTTCAGTTTGCAGCGGCAAGACTTAATATCACATCCGCAACAAGCATCGTAATAGAGAGAAGATCTATTAAGAAGTTACTACAAAAACTTGGACAAAATGAGGAAACCAAAAAGGTGATCTTGAAAAATCTGTTGTATCTTCTAATAAAGTATGGAAACTTATTAAACACGGGAGAACAAGAGGAGGTTTATTCTCATCGTGAAGAACCATCGGCGAATGAGAACTCCAGTCATGATTCAAACCACGATCAGTATGGAATTCGTGCCAGCGAGTTGATTAGAGTCACACCTCCGGAGGAATATGCGTGCCCGATATCTTTAAGGTTGATGTATGATCCTGTTGTCATTGCTTCAGGAGAAACATACGAGCGGATGTGGATACAAAAATGGTTTGATGAGGGTAATGTTATATGCCCGAAAACTAAAAAGAAACTGCTGCATTTGGCGATGACTCCTAACGTTGCTTTAAAGGAATTAATATCAAAATGGTGCAAAACTAATGACGTCTCCATTCCTAATCCAAGTAGGCAAGCGGAAGACATTCGCTCATGGGAAGCTTCAGTCACTTCCATTAGGAGTTTCGGAAGTTCCATGAATGGTTTGAATGTGCCAATGGATCTTAGTAACGTATCATTTGGATCAGTAGATAACAGTTATAATTCAGATTCCTCACTTGTGAAGGCTAGTCGTGGCTTAAATTCGATGTTGATCAAAACTAGAAACAGTTCTCGCGGGCATCAATCTCGTTCGCAGATACATGGCTCATATCTGGCGTCCTTGTCTGAACTTCATGAGCGTCAATGGGATTCACAGTGCCAAGTAGTCAAAGATATGAAAATAGATTTCAAATGCAATTCCGAAGCTTTTAACTCTGTGTCACCGGATAATTTCATTGACCCAGTTACGAGATTTCTGAGCACTGCATATGATAAGCATGACACAAAAGCTCTGCGAAGTGGATGTCAATTACTGTTGGAATTTACAAAGTACTGCAGAAATGGTGTGACAAACTTAAGTGAAGATACATGCAGTGTGTTGGCAAGTCTGCTAGAGACTGAAGCGATTGGAGAAGCTCTTGCTATACTGGAAGAATTGTCGAACCATTGGTCCGATAAAGCGAACATTGCAGCTTCCAATGCACTGACTTCTATTTTAAAGATCCTTGATTCTGGTAACCAAGAGTACCAACGGAAAGCTATTAGAATAATGTGCAATTTTTCATCCAATTCTGAATTTTGTTCGTATATCGTGTCTCTCGGGTGCATCCCAAAATTACTACCATTTTTCGAAGATAAGTCCCTTTCAAGAGACTGTATATGCATATTGAAAAACCTTTGTGATACTAAAGATGGTAGGGTATCTGTTGTTGAAACTAAGGGATGCATGTCTTGTGTTGTTGAAATACTTGGGTCCAGCACAGACGAAGAAAAGGAATTTGCACTGGCGATTGTACTCTCTTTGTGCTCTCAACGCGTGGAATATTGTGAGTTGGTTATGGAGGAGGGTATTATACCGTATCTTGTCAATATCTCCAATATGGGAAACGATGGCACAAAGGTGTATGCGTTGGAACTGCTCCGACTTTTAAGGGATGTCGAGAGCGAAGGTTGCTTTGAGCAGAATCTCGACAAATCTAGAGATTCCAACTATCAATATGAAGAAAAGAAATCGTCAAAGAAATCCACATTTTTGAACAAGCTATCACGGTTCGGAAAATCAAGTTCAATTTCATCAAAAAACAAGAGATAA 2247 0.4036 MGTDSCKVVETLPDPRSFKVHRRLCTELKKLVDRVLRIFPQIEEARPRSSSGIPALVLLTSTVDKAKQLLQNCSDSSVLYLAITGESILSKCQKSRKSLEKSLVQIQDIVPVMLAAEISRIVDDLRRVTFVLDSAEEEAGRVMRELLQQGPSTADNDSKENSDVKSLQFAAARLNITSATSIVIERRSIKKLLQKLGQNEETKKVILKNLLYLLIKYGNLLNTGEQEEVYSHREEPSANENSSHDSNHDQYGIRASELIRVTPPEEYACPISLRLMYDPVVIASGETYERMWIQKWFDEGNVICPKTKKKLLHLAMTPNVALKELISKWCKTNDVSIPNPSRQAEDIRSWEASVTSIRSFGSSMNGLNVPMDLSNVSFGSVDNSYNSDSSLVKASRGLNSMLIKTRNSSRGHQSRSQIHGSYLASLSELHERQWDSQCQVVKDMKIDFKCNSEAFNSVSPDNFIDPVTRFLSTAYDKHDTKALRSGCQLLLEFTKYCRNGVTNLSEDTCSVLASLLETEAIGEALAILEELSNHWSDKANIAASNALTSILKILDSGNQEYQRKAIRIMCNFSSNSEFCSYIVSLGCIPKLLPFFEDKSLSRDCICILKNLCDTKDGRVSVVETKGCMSCVVEILGSSTDEEKEFALAIVLSLCSQRVEYCELVMEEGIIPYLVNISNMGNDGTKVYALELLRLLRDVESEGCFEQNLDKSRDSNYQYEEKKSSKKSTFLNKLSRFGKSSSISSKNKR* 749
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g2492 748 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 262 337 IPR013083 -
Mtr8g2492 748 SUPERFAMILY RING/U-box 255 339 - -
Mtr8g2492 748 MobiDBLite consensus disorder prediction 227 242 - -
Mtr8g2492 748 MobiDBLite consensus disorder prediction 227 249 - -
Mtr8g2492 748 SUPERFAMILY ARM repeat 518 710 IPR016024 -
Mtr8g2492 748 Gene3D - 451 707 IPR011989 -
Mtr8g2492 748 SMART Ubox_2 266 329 IPR003613 GO:0004842|GO:0016567
Mtr8g2492 748 Pfam U-box domain 264 333 IPR003613 GO:0004842|GO:0016567
Mtr8g2492 748 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 2 740 - -
Mtr8g2492 748 PANTHER U BOX DOMAIN-CONTAINING 2 740 - -
Mtr8g2492 748 CDD RING-Ubox_PUB 269 309 IPR045210 -
Mtr8g2492 748 SMART arm_5 657 697 IPR000225 GO:0005515
Mtr8g2492 748 SMART arm_5 575 613 IPR000225 GO:0005515
Mtr8g2492 748 ProSiteProfiles U-box domain profile. 262 336 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g2492 Mtr-Chr8 35306025 35312386 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g2492 15 701 U-box Gene Family AT4G36550 39.398 4.94e-141 429
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g2492 - - gmx:100798951 943.725
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g2492 8 35306025 35312386 Mtr8g2492 8 35306025 35312386 ECH
Mtr5g0797 5 7892998 7897433 Mtr8g2492 8 35306025 35312386 ECH
Mtr5g0797 5 7892998 7897433 Mtr8g2492 8 35306025 35312386 PCT