Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g2486 ATGGCCACAGAAGAACCAATCGTTGCGGTGGAACCCGTTCCCGAACCAATCATCACTGTCGAACCTCCAGCATTGGAGAAAGATCAGTTCGAACCAAAGGTTGCTGAAGCAGAGAAGAAGACGAAGAAAGTAGCGAAGGAATCCAAACCTAAGAAAGCTTCCAAACCACGAAACCCTGCTTCTCATCCTACTTACGAAGAGATGATTAAGGATGCAATTGTATCTCTGAAGGATAGGACGGGTTCAAGCCAATATGCGATTGCAAAATTCATTGAAGAGAAACACAAACAGCTTCCATCAAATTTCAAGAAATTATTGTTTCAGAGTTTGAAGAATGTTGCTTCTGGAAAGCTCGTTAAGGTGAAAGGTTCATTCAAGTTTGTGGAAGGGATTACGTGA 399 0.4236 MATEEPIVAVEPVPEPIITVEPPALEKDQFEPKVAEAEKKTKKVAKESKPKKASKPRNPASHPTYEEMIKDAIVSLKDRTGSSQYAIAKFIEEKHKQLPSNFKKLLFQSLKNVASGKLVKVKGSFKFVEGIT* 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g2486 132 SMART h15plus2 59 124 IPR005818 GO:0000786|GO:0003677|GO:0006334
Mtr8g2486 132 SUPERFAMILY "Winged helix" DNA-binding domain 58 127 IPR036390 -
Mtr8g2486 132 PRINTS Histone H5 signature 48 69 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Mtr8g2486 132 PRINTS Histone H5 signature 75 92 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Mtr8g2486 132 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 61 129 IPR005818 GO:0000786|GO:0003677|GO:0006334
Mtr8g2486 132 PANTHER LINKER HISTONE H1 AND H5 FAMILY PROTEIN 2 128 - -
Mtr8g2486 132 MobiDBLite consensus disorder prediction 26 44 - -
Mtr8g2486 132 PANTHER HISTONE H1 2 128 - -
Mtr8g2486 132 MobiDBLite consensus disorder prediction 20 66 - -
Mtr8g2486 132 Pfam linker histone H1 and H5 family 62 126 IPR005818 GO:0000786|GO:0003677|GO:0006334
Mtr8g2486 132 Gene3D - 56 130 IPR036388 -
Mtr8g2486 132 CDD H15 59 124 IPR005818 GO:0000786|GO:0003677|GO:0006334
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g2486 Mtr-Chr8 35268098 35268630 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g2486 58 127 Single Myb Histone (SMH) Gene Family AT1G72740 33.803 1.08e-06 44.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g2486 K11275 - gmx:100795994 137.502