Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g2450 ATGGCTGGTTTGTTCTCATTAGGAGGAGGTGGAAGAGGAAACCAAGGAGAAGAATCACAACAACAAGGTCATATTCCACCACAAGAGACACTATTTTGGTACAACAAAAACGATGATGTTTCATCTTACAGAGGTAATTTAGAATTATGGAACCAACACCAACAACACCAGCAACATCAACAACAAGATGATATGCATGCTGCACGGCCGTTCTTCCCGCGAGATCTCTACGGTCCAGGAGTTGGTTTAGGTGTTGGACCAAGCAGGGTTTCATCAGATGATCATGAACATCAATCGTCGTCGAGATCGGCGGCGTTTACTATGGCGATGAGGTCTTCTTCTTCAGCTGAAGGGATAAGTTGTCAAGATTGTGGTAACCAAGCTAAGAAAGATTGTCCTCACATGAGATGTAGAACTTGTTGTAAGAGTCGTGGTTTTCAGTGTCAAACTCATGTTAAAAGCACTTGGGTTCCTGCTTCTAGACGCCGTGAACGTCAACAACAGTTATCTTCTTCTCCATTACAAAGAGATATTTCTAAACGCCCTAGAGATGGTTCAAATGCTCTTGTTTCAACTCGTAATTTTCATACAGGCTTAGAGGAAGCAAATTTTCCTGCTGTGGTAAGCTCACCAGCGGAGTTCAGGTGTGTAAGGGTTAGTTCAATTGATGATGCAGATGATAGGTATGCATATCAAACGGCTGTTAACATTGGAGGACATTTGTTCAAAGGAATTCTCTATGATTTTGGTCCAGAAAGTAGTACCAACAATAGCAACAACAATAGTAATTATAATAATAGTAATTACATGATTGGGGAGACTTCCGGTGGAGGCGGTGTTGGCGTTGCTCAACCGTTGAACCTAATTGCCGACTCTGATACCACTGTTGTTGCCTCTTCGGGCGCACTTGTTGATCCTTCTTCGTTGTATTCGGCTCCGATTAATGCCTTCATGACGGCTAGTGGTACGCAATTCTTCCCTCGCCCAAGATCTTGA 996 0.4317 MAGLFSLGGGGRGNQGEESQQQGHIPPQETLFWYNKNDDVSSYRGNLELWNQHQQHQQHQQQDDMHAARPFFPRDLYGPGVGLGVGPSRVSSDDHEHQSSSRSAAFTMAMRSSSSAEGISCQDCGNQAKKDCPHMRCRTCCKSRGFQCQTHVKSTWVPASRRRERQQQLSSSPLQRDISKRPRDGSNALVSTRNFHTGLEEANFPAVVSSPAEFRCVRVSSIDDADDRYAYQTAVNIGGHLFKGILYDFGPESSTNNSNNNSNYNNSNYMIGETSGGGGVGVAQPLNLIADSDTTVVASSGALVDPSSLYSAPINAFMTASGTQFFPRPRS* 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g2450 331 MobiDBLite consensus disorder prediction 157 176 - -
Mtr8g2450 331 PANTHER PROTEIN SHORT INTERNODES 1 329 - -
Mtr8g2450 331 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 204 251 IPR006511 -
Mtr8g2450 331 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 329 IPR007818 GO:0003700|GO:0006355
Mtr8g2450 331 MobiDBLite consensus disorder prediction 78 111 - -
Mtr8g2450 331 MobiDBLite consensus disorder prediction 13 27 - -
Mtr8g2450 331 MobiDBLite consensus disorder prediction 1 27 - -
Mtr8g2450 331 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 120 162 IPR006510 -
Mtr8g2450 331 MobiDBLite consensus disorder prediction 157 189 - -
Mtr8g2450 331 Pfam Domain of unknown function (DUF702) 118 252 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g2450 Mtr-Chr8 34952312 34955101 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g2450 1 331 C2H2 Transcription Factor Family AT3G51060 43.622 1.25e-79 245
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Mtr8g2450 DUF702 4.6e-60 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g2450 - - lja:Lj0g3v0059359.1 349.747