Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g2437 ATGGAGTGTGTGAAAGCAGAAGCAGCTTTGAAAAGCAGTTTTAACATAAGCACAGCAGTGAAACTCACTCCACAAAATTTGTTAGAAGATTTATCTTCTTTTAATGTTCAAGACATAGCTCCTATTGATGATTTCTTTGTCGATGATTTCCTTAACTTTTCAAACGAAGAACAAGAACATGAACATGAACAGGACTTTCTTGTAGAAAAACAACAAAATCATACCCCTCAATACACCACCCAAAACCAAAACCAAATTTCACACCCCATACTCAACAACCAGTTTGTTTCATTACCAACTACCGAACTCACCGTTCCGGTAGAAGAAGCTGCTGATTTAGAATGGTTATCATATTTTGTTGAAGATTCCTTCTCAGAATTTCCCAAAACAGAAAATCTCCAACTTCAACAAAAAGCTCATGAACCAAACCCCACGTTTTCTACACCATGTTTCAAAACTCCGGTACCGGCAAAAGCAAGAAGCAAGAGAACACGAACCGGTATTCGTGTATGGCCAATTTCACTAGCCAATTCATCTTCAACCTCAAGCTCAGCTACACTTTCTTCCTCAAACCTCGAGGAATGTTCAAAGCCAGCGGAGAAAAAAGCGAAGAGGATGGTTTCACCGGACGGAGAAGCAAGAGGTGTGCCGCGGCGGTGTAGTCATTGTGGAGTGCAGAAGACTCCTCAATGGCGAACCGGACCAGGTGGGCCGAAAACACTTTGTAATGCTTGTGGGGTTCGTTATAAATCGGGTCGGTTGTTACCGGAATATAGACCCGCTTGTAGCCCTACGTTTTCCAGTGAATTGCATTCAAATCATCACCGGAAAGTTATTGAGATGCGGCGGAAGAAGGAGGTTGTTCCCGGTTTTTGA 876 0.4258 MECVKAEAALKSSFNISTAVKLTPQNLLEDLSSFNVQDIAPIDDFFVDDFLNFSNEEQEHEHEQDFLVEKQQNHTPQYTTQNQNQISHPILNNQFVSLPTTELTVPVEEAADLEWLSYFVEDSFSEFPKTENLQLQQKAHEPNPTFSTPCFKTPVPAKARSKRTRTGIRVWPISLANSSSTSSSATLSSSNLEECSKPAEKKAKRMVSPDGEARGVPRRCSHCGVQKTPQWRTGPGGPKTLCNACGVRYKSGRLLPEYRPACSPTFSSELHSNHHRKVIEMRRKKEVVPGF* 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g2437 291 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 214 276 - -
Mtr8g2437 291 MobiDBLite consensus disorder prediction 195 217 - -
Mtr8g2437 291 CDD ZnF_GATA 219 267 IPR000679 GO:0006355|GO:0043565
Mtr8g2437 291 Gene3D - 211 287 IPR013088 GO:0006355|GO:0008270
Mtr8g2437 291 PANTHER GATA TRANSCRIPTION FACTOR 1 287 - -
Mtr8g2437 291 PANTHER GATA TRANSCRIPTION FACTOR 1 287 - -
Mtr8g2437 291 MobiDBLite consensus disorder prediction 140 164 - -
Mtr8g2437 291 PIRSF Txn_fac_GATA_plant 6 289 IPR016679 GO:0003677|GO:0005634|GO:0045893
Mtr8g2437 291 ProSitePatterns GATA-type zinc finger domain. 220 245 IPR000679 GO:0006355|GO:0043565
Mtr8g2437 291 MobiDBLite consensus disorder prediction 178 194 - -
Mtr8g2437 291 Pfam GATA zinc finger 220 254 IPR000679 GO:0006355|GO:0043565
Mtr8g2437 291 SMART GATA_3 214 268 IPR000679 GO:0006355|GO:0043565
Mtr8g2437 291 ProSiteProfiles GATA-type zinc finger domain profile. 214 250 IPR000679 GO:0006355|GO:0043565
Mtr8g2437 291 MobiDBLite consensus disorder prediction 178 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g2437 Mtr-Chr8 34803273 34804790 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g2437 7 286 C2C2-Gata Transcription Factor Family AT5G66320 45.283 4.54e-68 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Mtr8g2437 GATA 4.2e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g2437 - - cam:101512459 442.965
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g0840 5 8256069 8257794 Mtr8g2437 8 34803273 34804790 ECH
Mtr8g2437 8 34803273 34804790 Mtr8g2437 8 34803273 34804790 ECH
Mtr5g0840 5 8256069 8257794 Mtr8g2437 8 34803273 34804790 PCT