Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g2425 ATGAGAACTCGAAATGCTGATTCATCTTCGAAATCCACAACCCCTAAGAAAACACCGCCGGCGAGAAAATCCGCCGGAGAATCTCCCGCCGCAAAACGCACTCCTCCTTCAAAACCCAAAAACGCTAAGAAGACGGAAGCATCGCCCGCAACCGATCCAGATCAATCTCAGAAGAAGAAATTATTAGCTAGTGCTACCACTGCAAAATCTGGGAAGTGGAAATCACCGGGGAAACCGCGAACAAAAGTGGTTGCCGTCACTCCGAATTTGGAAGAGAAATTGGAGGTAGAAGCTGATGAAACTACAGTTATAGATAAAGTGGAAGAAGTTGGAAATGTTAACGACATCGATGCAGATACTATGGAGTGTGAAAAAGAGGGGGAACAGAAGCCGATGGAAGTGGATCAACCTGTTGTTGAAAAAGTTTGTGAATTGGTCGAAAAGGGAAAGAGCACAGTAGAGGTTGAACCAATTTTTTCTCAGGATGGTTCGATTTCTTTGAAACAACCAGGTTGCACCCTTGTGGACCTTAATATTTCTGCTGCCGATAATGAAGATTATACTGGTGTGAAGGAGGGAGGGGAAACGTTGAAAGAGGAAGAGTTGACTGTACAAGAGGGAGAGAGAGGAAAGGAAGAGTTGAAAGCACCGGAGGGAGAGAGAGGAACGGACAAGTTGAAAGCACAGGAGGGAGAGAGAGGAACGGACAAGTTGAAAGCACATGAAGGAGAAAAAGGAACGGACGAGTTGAAAGAACAAGGAGAGAATGGAAAAGAAGAGTTGGACCAACAAAAAAGCGAGAAAGAAATGGAAGAGTTTAAAGCAGTGGAAGGAGAAGAAGGAAAGGAAGAGCTGAAAGAATCAGTAGGAGATAAAGAAAAAGAAGAGTTAAAAGAACATGGAGAGAAAGGAAAGGAAGAGTTAAAAGAAGAGGATCTAGAAAACACAAAAGGAGAGGAAGCAAACATTATTGGACATGAAGAGCATTCCAGTGTAGAAGTACAAGCCCAGCTGCAAAAAGACGTTGATCTCAAAAATTATGGTGTTGAAAGGGCAAAGAGTGGCGAATCGATAGATCTTGGGGAACAAGAGAGGGTGCAGCTTGAGGATGAAGATCCAGAGGAAGATCCAGAAGAAGACCCAGAAGAAGATCCTGAGGAACTGCCCGAAGACACTGAGACATTGGATGAAGAGCATGACGAGCATATGGAATTTGAAGCCATTGCAAAGCAACGAAGAATTAGGAAAGAGCATGAGATATTTGTTGGTGGATTGGATCGTGATACTACCGAGGAAGATCTGAAAAAGATTTTTCAGAGGATTGGGGAGGTACTGGAAGTCAGGTTGCATAAAAATTCTTCAACAAGTAAAAATAGGGGCTATGCTGTTGTGAGGTTTGCTAATAAGGAGCATGCAAAGAAAGCTTTGTCTGAAATGAAGAACCCTGTTATACGTGGAAAACGATGTGGCACTTCACCTAGTGAGGATAATGACACATTATTCTTGGGAAATATTTGCAATACATGGACAAAAGAAGCTGTTAAACAGAAGCTGAAGGATTATGGTGTAGAAGGGGTTGAAAACATTACACTCGTACCGGATGTTCAACATGAAGGCTTGAGCCGCGGTTTTGCTTTCCTTGAGTTTTCTTGTCATGCTGATGCCATGCTCGCATATAAGAGACTTCAAAAGCCTGGTGTCATCTTTGGTCATGCCGAGCGAACTGCTAAAGTAGCCTTTGCTGAACCGATACGTGAACCAGACCCAGAGATAATGGCACAAGTGAAGTCTGTGTTTATTAATGGTCTACCTCTTCACTGGGACGAAGATCATGTGAGGGAACATCTGAAATCTTACGGTGAGATTGTAAAAATTGTGTTGGCGAGGAAAATGTCCACATCTAAGAGGAAGGATCACGGATTCGTGGATTTTTCTACACATGAAGCCGCTTTAGCTTGTGTTGACGGTGTAAATAAATCAGAATTGGGAGATGGGACATCGAAGATAAAATTGAGAGCTAGGCTTTCAAACCCTTTGCCTAAAACGCAGGCTGTCAAGGGCGGCATGTGTGGTGGCCTCCGTATTGGTCAGGCTAGGAGTGAAGCCTACCCAAGATCCGAAAGGGGTTTTGGGCGAGGGCGGGGAAGACAGCCCTTCAACAACAGGGGAAATTTCAGCAGGGGCAGGAGTTTCAATCATCATGGGGGGCGTGGTCAAATCAGAAGAATGGGTTTTTGGGACGAACCTGATTTTAGTATGCATCCGGATTTCCATCAGCGGCAATTTGGTCCACAAGGACCTATGAGGGGCGGGCATTATGCAGCTAGTCGAGGTGGCGCTCCTTTTGCTGGTCCATCTAGACATTATCATGATAGAGCATGGTATGGTATCCCTGACGGAGGCCCCATTGAGCCTATTCCTCCAAGAAGGCCCTACTCTCCTGGTGGACAGTTTTATGGTATCCCTGATGGAGGCCCCGGTGAGCCTATTCCTCCAAGAAGGCCCTACTCTCCAGGTGGACAGTTTTATGGTATCCCTGATGGAGGCCCTGGTGAGCCTATTCCTCCAAGAAGGCCCTACTCTCCAGGTGGGCAGTTTTATCGTATCCCTGATGGAGGCCCCGGTGAGCCTATTCCTCTAAGAAGGCCATACTCTCCAGGTGGACAGTTTGACATGCCATTTATGGGAAGGCATGTTGATGATCCATATCTATATGATGACAATATGCGTGGAATCAAACGCCCATTTCATATGACTGACCCTGAACCTGATTACATCGGGCCTAATAGATTTCGCCCCCGATTTGATTATGCCGATCCATCTGTATTTCACGGAACTCAACATCATGATTATGCTGGTGCTGGCAGAGGACAGTTCCCGCCGGACTATTATGCTTCTGACCATGGTGGAGCTCCATATCCATCTTTTTATGGGGGTGAAGGCCCACATGGACACAGATACTATTATTAG 2970 0.4556 MRTRNADSSSKSTTPKKTPPARKSAGESPAAKRTPPSKPKNAKKTEASPATDPDQSQKKKLLASATTAKSGKWKSPGKPRTKVVAVTPNLEEKLEVEADETTVIDKVEEVGNVNDIDADTMECEKEGEQKPMEVDQPVVEKVCELVEKGKSTVEVEPIFSQDGSISLKQPGCTLVDLNISAADNEDYTGVKEGGETLKEEELTVQEGERGKEELKAPEGERGTDKLKAQEGERGTDKLKAHEGEKGTDELKEQGENGKEELDQQKSEKEMEEFKAVEGEEGKEELKESVGDKEKEELKEHGEKGKEELKEEDLENTKGEEANIIGHEEHSSVEVQAQLQKDVDLKNYGVERAKSGESIDLGEQERVQLEDEDPEEDPEEDPEEDPEELPEDTETLDEEHDEHMEFEAIAKQRRIRKEHEIFVGGLDRDTTEEDLKKIFQRIGEVLEVRLHKNSSTSKNRGYAVVRFANKEHAKKALSEMKNPVIRGKRCGTSPSEDNDTLFLGNICNTWTKEAVKQKLKDYGVEGVENITLVPDVQHEGLSRGFAFLEFSCHADAMLAYKRLQKPGVIFGHAERTAKVAFAEPIREPDPEIMAQVKSVFINGLPLHWDEDHVREHLKSYGEIVKIVLARKMSTSKRKDHGFVDFSTHEAALACVDGVNKSELGDGTSKIKLRARLSNPLPKTQAVKGGMCGGLRIGQARSEAYPRSERGFGRGRGRQPFNNRGNFSRGRSFNHHGGRGQIRRMGFWDEPDFSMHPDFHQRQFGPQGPMRGGHYAASRGGAPFAGPSRHYHDRAWYGIPDGGPIEPIPPRRPYSPGGQFYGIPDGGPGEPIPPRRPYSPGGQFYGIPDGGPGEPIPPRRPYSPGGQFYRIPDGGPGEPIPLRRPYSPGGQFDMPFMGRHVDDPYLYDDNMRGIKRPFHMTDPEPDYIGPNRFRPRFDYADPSVFHGTQHHDYAGAGRGQFPPDYYASDHGGAPYPSFYGGEGPHGHRYYY* 990
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g2425 989 MobiDBLite consensus disorder prediction 344 364 - -
Mtr8g2425 989 Gene3D - 498 582 IPR012677 -
Mtr8g2425 989 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 418 496 IPR000504 GO:0003723
Mtr8g2425 989 SUPERFAMILY RNA-binding domain, RBD 587 680 IPR035979 GO:0003676
Mtr8g2425 989 Gene3D - 349 497 IPR012677 -
Mtr8g2425 989 MobiDBLite consensus disorder prediction 186 399 - -
Mtr8g2425 989 CDD RRM_SF 598 670 - -
Mtr8g2425 989 MobiDBLite consensus disorder prediction 1 82 - -
Mtr8g2425 989 CDD RRM_SF 500 563 - -
Mtr8g2425 989 SMART rrm1_1 597 670 IPR000504 GO:0003723
Mtr8g2425 989 SMART rrm1_1 499 579 IPR000504 GO:0003723
Mtr8g2425 989 SMART rrm1_1 419 492 IPR000504 GO:0003723
Mtr8g2425 989 MobiDBLite consensus disorder prediction 365 399 - -
Mtr8g2425 989 CDD RRM_SF 420 488 - -
Mtr8g2425 989 SUPERFAMILY RNA-binding domain, RBD 419 563 IPR035979 GO:0003676
Mtr8g2425 989 MobiDBLite consensus disorder prediction 48 71 - -
Mtr8g2425 989 MobiDBLite consensus disorder prediction 701 736 - -
Mtr8g2425 989 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 420 488 IPR000504 GO:0003723
Mtr8g2425 989 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 500 564 IPR000504 GO:0003723
Mtr8g2425 989 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 598 664 IPR000504 GO:0003723
Mtr8g2425 989 Gene3D - 585 742 IPR012677 -
Mtr8g2425 989 Coils Coil 247 271 - -
Mtr8g2425 989 MobiDBLite consensus disorder prediction 188 327 - -
Mtr8g2425 989 PANTHER NUCLEOLIN-LIKE ISOFORM X1 890 982 - -
Mtr8g2425 989 PANTHER NUCLEOLIN-LIKE ISOFORM X1 395 763 - -
Mtr8g2425 989 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 890 982 - -
Mtr8g2425 989 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 395 763 - -
Mtr8g2425 989 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 498 583 IPR000504 GO:0003723
Mtr8g2425 989 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 596 678 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g2425 Mtr-Chr8 34680821 34687565 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g2425 420 664 Eukaryotic Initiation Factors Gene Family AT1G71770 25.969 1.24e-14 76.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g2425 - - gmx:100784338 917.916
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g2425 8 34680821 34687565 Mtr8g2425 8 34680821 34687565 ECH