Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g2421 ATGGCCATTAGAAAATCCAACAAGCTACCACAACCAGATGTTATTATCAAGCAAATTCTTAAAAGATGTTCAAGTTTTGGAAAGAAAAATGGTTACAATGAAGAGAGTCTTCCTGAAGATGTACCAAAAGGTCATTTTGTTGTTTATGTTGGAGAAAATAGAACAAGATATATTGTTCCAATTTCATGGTTGCCTCATCCACAATTTCAAAGATTGCTTCAAAGAGCTGAGGAGGAATTTGGCTTCAATCATGACATGGGCCTTACCATTCCTTGTGATGAAGTTGCTTTCGAGTTTCTTACTTCATTGATCAGATAA 318 0.3522 MAIRKSNKLPQPDVIIKQILKRCSSFGKKNGYNEESLPEDVPKGHFVVYVGENRTRYIVPISWLPHPQFQRLLQRAEEEFGFNHDMGLTIPCDEVAFEFLTSLIR* 106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g2421 105 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 6 105 IPR003676 GO:0009733
Mtr8g2421 105 PANTHER AUXIN-INDUCED PROTEIN 15A-LIKE 6 105 - -
Mtr8g2421 105 Pfam Auxin responsive protein 28 103 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g2421 Mtr-Chr8 34636785 34637536 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g2421 1 105 Calmodulin-binding Proteins AT3G43120 41.121 3.46e-20 78.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g2421 K14488 - gmx:100500218 184.882
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g0866 5 8530328 8531223 Mtr8g2421 8 34636785 34637536 ECH
Mtr3g4255 3 56411568 56412405 Mtr8g2421 8 34636785 34637536 ECH
Mtr8g2421 8 34636785 34637536 Mtr8g2421 8 34636785 34637536 ECH
Mtr4g2181 4 35369982 35370793 Mtr8g2421 8 34636785 34637536 ECH