Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g2407 ATGGCAGACATAGTTAAACAATTGTTAGCAAAACCGATCCAACTAGCAGACCAAGTAAGCAAAGCAGCTGAAGAAGGAAGCTCATCTTTCAAACAAGAATGTCTAGACCTCAAATCAAAAACCGAAAAACTCGCTTCTCTTCTCCGACAAGCTGCAAGATCAAGCTCCGATTTATACGAACGACCCACACGTCGTATCATCGGAGACACCGAACAAGTTCTTGAAAAAGCACTCACTTTAGTCCTTAAATGCAAAGTCAACGGTCTTATGAAACGTGTTTTCAGCATAGTTCCTTCTGCAGCTTTTCGTAAAATGTCTTCTCATCTTGAGAATTCAATTGGGGATGTTTCATGGCTTCTTCGAGTTTCAGCTCCGGCTGAAGAAGGTAGTTATGAATGTCTTGGGCTGCCACCAATTGCTTCAAATGAACCGATTTTGGGTTTAATTTGGGAGCAGATTGCGATTTTACATAATGGGTCGTTTGATGATCGATCTGATGCTGCTGCTTCTTTGGTTTCTCTTGTTCGTGATAATGATCGGAATGGGAAATTGATTATTGAAGAGGGTGGTGTTGGGCCTTTACTGAAACTTTTGAAAGAAGGTAAGAAAGAAGGTCAAGAGAATGCTGCGAAAGCAATTGGGCTATTGGGTCGTGATCCGGAGAGTGTTGAGGTTATGATTCATGCTGGTGTTTGTTCTGTTTTCGCGAAGATTCTTAAAGAAGGTCCTATGAAAGTTCAAGCTGTTGTAGCTTGGGCTGTTTCTGAACTTGTTTCTAAGTATCCTAAATGTCAAGATGTTTTTGCTCAGCATAATATTGTTAGGTTGCTTGTGAGTCACATTGCTTTTGAAACTGTTCAAGAACATAGTAAATATGCAATTGTTAGTAATAAGGCTATTTCTTCAATTCATGCTGTTGTGTTGGCTAGTGGTAATAATAATAATCCTGATTCAAATGATGTGAAAAAAGAGAATGAAGATGAGGTGAAAATTAAGATGCAGCATCCTTTAGGTGATAAATCTGCACATCAGATGCATAAAGTTGTGGCAAGTACTATGGCAATGCATGCTGCAAACAATAATAACAAGCAACAAACCAATGAAGGGAGTAAAGTGAGTTTAAACTCTCAACCTCCGGTTCAGGTGGCTAGTATTCCAAATGGGAATGGTAATGGTAACACGAAGCAAGGCTATTCGTATTCTGGAATTAACGTGAAGGGAAGGGAGCTTGAGGATGCTGAGAGTAAGGCTGACATGAAAGCAATGGCTGCGAAAGCTCTTAGGTATTTAGCTAAGGGTAACTCGGCGATTTGTCGTAGCATAACTGAATCAAGGGCTTTGTTATGTTTTGCTATTCTACTTGAAAAAGGGCCTGAAGAAGTGAAGTACAATTCTGCTTTGGCGTTGAAAGAGATTACTGCAGTGGCTGAGAAAGATCCTGAATTGAGAAGATCGGCGTTTAAGCCAAACACCCCTGCTTGTAAAGCGGTTGTTGATCAAGTGATTGATATTATTGACAAAGAAGATAAGAGACTTTTGATTCCTTGTATCAAGGTTATTGGGAGTTTGGCTAGGACATTCAGGGCAACTGAGACAAGGATAATTGGTCCGTTGGTTCGACTTCTTGACGAAAGAGAGGCTGAAGTATCAAAAGAGGCTGCAGACTCACTCGCGAAATTCGCTTCCAATGATAACTACCTTCACCTTGATCACTGTAAGGCAATTATAAGCTTTGGTGGTGTAAAACCCTTGGTTCAGCTTGTGTATCTTGGGGAGCCGCCAGTTCAATATTCAGCCTTGGTTCTGCTATCCTATATTGCGTTGCACGTGCCAGACAGCGAAGAACTAGCAAAAGCTGAGATTCTGGGAGTTCTTGAATGGGCGTCTAAGCAACCTAACATGGCTCATGATGAAGCTATTGAGGCATTGTTGCAAGAGTCCAAGAGTAGGCTGGAGCTTTACCAGTCTAGAGGTTCAAGAGGATTCCAAAAATTACATCAATAG 2004 0.4112 MADIVKQLLAKPIQLADQVSKAAEEGSSSFKQECLDLKSKTEKLASLLRQAARSSSDLYERPTRRIIGDTEQVLEKALTLVLKCKVNGLMKRVFSIVPSAAFRKMSSHLENSIGDVSWLLRVSAPAEEGSYECLGLPPIASNEPILGLIWEQIAILHNGSFDDRSDAAASLVSLVRDNDRNGKLIIEEGGVGPLLKLLKEGKKEGQENAAKAIGLLGRDPESVEVMIHAGVCSVFAKILKEGPMKVQAVVAWAVSELVSKYPKCQDVFAQHNIVRLLVSHIAFETVQEHSKYAIVSNKAISSIHAVVLASGNNNNPDSNDVKKENEDEVKIKMQHPLGDKSAHQMHKVVASTMAMHAANNNNKQQTNEGSKVSLNSQPPVQVASIPNGNGNGNTKQGYSYSGINVKGRELEDAESKADMKAMAAKALRYLAKGNSAICRSITESRALLCFAILLEKGPEEVKYNSALALKEITAVAEKDPELRRSAFKPNTPACKAVVDQVIDIIDKEDKRLLIPCIKVIGSLARTFRATETRIIGPLVRLLDEREAEVSKEAADSLAKFASNDNYLHLDHCKAIISFGGVKPLVQLVYLGEPPVQYSALVLLSYIALHVPDSEELAKAEILGVLEWASKQPNMAHDEAIEALLQESKSRLELYQSRGSRGFQKLHQ* 668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g2407 667 PANTHER ARMADILLO REPEAT ONLY 4 1 662 - -
Mtr8g2407 667 Gene3D - 150 334 IPR011989 -
Mtr8g2407 667 MobiDBLite consensus disorder prediction 362 397 - -
Mtr8g2407 667 PANTHER - 1 662 - -
Mtr8g2407 667 SMART arm_5 568 608 IPR000225 GO:0005515
Mtr8g2407 667 SMART arm_5 177 218 IPR000225 GO:0005515
Mtr8g2407 667 SMART arm_5 434 474 IPR000225 GO:0005515
Mtr8g2407 667 SMART arm_5 219 259 IPR000225 GO:0005515
Mtr8g2407 667 Gene3D - 409 646 IPR011989 -
Mtr8g2407 667 SUPERFAMILY ARM repeat 153 635 IPR016024 -
Mtr8g2407 667 Pfam Armadillo/beta-catenin-like repeat 183 215 IPR000225 GO:0005515
Mtr8g2407 667 Gene3D - 3 122 IPR036537 GO:0007166
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g2407 Mtr-Chr8 34498320 34501151 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g2407 147 281 U-box Gene Family AT3G46510 31.111 6.39e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g2407 - - mtr:MTR_8g075770 1254.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g2407 8 34498320 34501151 Mtr8g2407 8 34498320 34501151 ECH
Mtr8g2407 8 34498320 34501151 Mtr5g0882 5 8775830 8778537 PCT