Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g2405 ATGGCGGAGGAGAGAATCAGCGGCGTGGTGCAATGGTTCAACAACACCAAAGGCTTCGGATTCATCAAACCCGATGACGATAGTGAAGATCTCTTCGTTCATCAATCTGACATCAGATCTGAAGGATTTCGCTCTCTTTCCGAAGGCGATCGCGTCGAGTTCACCATCGCCGATGGCGATAACGGCAAAACCAAAGCCGTTGATGTCACCGGTCCTAAGGGTGAACCTCTTCAGGTTAGGCAGGATAACCATGGTGGAGGCGGCGGCGGTCGTGGATTTAGAGGCGGTGAGAGAAGGAACGGTGGTGGCGGTTGTTATACTTGTGGTGATACTGGTCACATCGCTAGGGATTGTGATCGTTCCGATCGGAATGATAGGAATGATCGTTCTGGTGGTGGTGGTGGTGGAGACCGTGACCGTGCTTGCTATACCTGTGGTTCTTTTGAACATTTTGCTAGGGATTGCATGCGTGGAGGCGGTAACAACAACAACGGTGGCGGTGGATATGGTGGTGGAGGCACATCTTGCTACAGGTGTGGTGGGGTTGGTCACATAGCAAGAGATTGCGCTACTCCTAGTAGCGGAGGTGGTGGAGGCGGCGCTTGCTATAAGTGCGGTGAGGTGGGTCACATAGCTAGGGATTGCAGCAATGAAGGAGGAAGGTTTGATGGTGGCAATGGAAGGTATGATGATGGCAATGGAAGGTTTGGTGGTGGCAACAGAAGATTTGGCAGTGGTGGCGGCGGACACGATGGAGGAAAAGGCACGTGCTTTAACTGTGGGAAGGCAGGACATTTTGCAAGAGATTGTGTTGAGGCTTCTGGTTGA 828 0.5229 MAEERISGVVQWFNNTKGFGFIKPDDDSEDLFVHQSDIRSEGFRSLSEGDRVEFTIADGDNGKTKAVDVTGPKGEPLQVRQDNHGGGGGGRGFRGGERRNGGGGCYTCGDTGHIARDCDRSDRNDRNDRSGGGGGGDRDRACYTCGSFEHFARDCMRGGGNNNNGGGGYGGGGTSCYRCGGVGHIARDCATPSSGGGGGGACYKCGEVGHIARDCSNEGGRFDGGNGRYDDGNGRFGGGNRRFGSGGGGHDGGKGTCFNCGKAGHFARDCVEASG* 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g2405 275 ProSiteProfiles Zinc finger CCHC-type profile. 142 155 IPR001878 GO:0003676|GO:0008270
Mtr8g2405 275 ProSiteProfiles Zinc finger CCHC-type profile. 105 118 IPR001878 GO:0003676|GO:0008270
Mtr8g2405 275 CDD CSP_CDS 6 71 IPR002059 GO:0003676
Mtr8g2405 275 Gene3D - 173 224 - -
Mtr8g2405 275 ProSiteProfiles Zinc finger CCHC-type profile. 202 217 IPR001878 GO:0003676|GO:0008270
Mtr8g2405 275 Gene3D - 91 167 - -
Mtr8g2405 275 ProSiteProfiles Zinc finger CCHC-type profile. 176 189 IPR001878 GO:0003676|GO:0008270
Mtr8g2405 275 PANTHER COLD SHOCK DOMAIN PROTEIN 2 96 168 - -
Mtr8g2405 275 PANTHER COLD SHOCK DOMAIN PROTEIN 2 131 274 - -
Mtr8g2405 275 PANTHER COLD SHOCK DOMAIN PROTEIN 2 1 95 - -
Mtr8g2405 275 SMART c2hcfinal6 175 191 IPR001878 GO:0003676|GO:0008270
Mtr8g2405 275 SMART c2hcfinal6 256 272 IPR001878 GO:0003676|GO:0008270
Mtr8g2405 275 SMART c2hcfinal6 104 120 IPR001878 GO:0003676|GO:0008270
Mtr8g2405 275 SMART c2hcfinal6 201 217 IPR001878 GO:0003676|GO:0008270
Mtr8g2405 275 SMART c2hcfinal6 141 157 IPR001878 GO:0003676|GO:0008270
Mtr8g2405 275 SUPERFAMILY Retrovirus zinc finger-like domains 238 271 IPR036875 GO:0003676|GO:0008270
Mtr8g2405 275 PANTHER COLD SHOCK PROTEIN 2 96 168 - -
Mtr8g2405 275 PANTHER COLD SHOCK PROTEIN 2 131 274 - -
Mtr8g2405 275 PANTHER COLD SHOCK PROTEIN 2 1 95 - -
Mtr8g2405 275 MobiDBLite consensus disorder prediction 63 96 - -
Mtr8g2405 275 Gene3D - 1 83 IPR012340 -
Mtr8g2405 275 ProSiteProfiles Cold-shock (CSD) domain profile. 5 71 IPR002059 GO:0003676
Mtr8g2405 275 PRINTS Cold shock protein signature 8 23 IPR002059 GO:0003676
Mtr8g2405 275 PRINTS Cold shock protein signature 29 38 IPR002059 GO:0003676
Mtr8g2405 275 PRINTS Cold shock protein signature 44 62 IPR002059 GO:0003676
Mtr8g2405 275 Pfam 'Cold-shock' DNA-binding domain 7 71 IPR002059 GO:0003676
Mtr8g2405 275 SUPERFAMILY Retrovirus zinc finger-like domains 168 218 IPR036875 GO:0003676|GO:0008270
Mtr8g2405 275 Pfam Zinc knuckle 255 270 IPR001878 GO:0003676|GO:0008270
Mtr8g2405 275 Pfam Zinc knuckle 176 190 IPR001878 GO:0003676|GO:0008270
Mtr8g2405 275 Pfam Zinc knuckle 201 216 IPR001878 GO:0003676|GO:0008270
Mtr8g2405 275 Pfam Zinc knuckle 104 119 IPR001878 GO:0003676|GO:0008270
Mtr8g2405 275 Pfam Zinc knuckle 140 156 IPR001878 GO:0003676|GO:0008270
Mtr8g2405 275 SMART csp_8 7 72 IPR011129 GO:0003676
Mtr8g2405 275 SUPERFAMILY Nucleic acid-binding proteins 3 70 IPR012340 -
Mtr8g2405 275 ProSitePatterns Cold-shock (CSD) domain signature. 19 38 IPR019844 -
Mtr8g2405 275 ProSiteProfiles Zinc finger CCHC-type profile. 257 270 IPR001878 GO:0003676|GO:0008270
Mtr8g2405 275 SUPERFAMILY Retrovirus zinc finger-like domains 98 158 IPR036875 GO:0003676|GO:0008270
Mtr8g2405 275 Gene3D - 249 275 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g2405 Mtr-Chr8 34422147 34423325 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Mtr8g2405 CSD 2.2e-25 CL0021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g2405 K09250 - gmx:106796585 256.914
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g2405 8 34422147 34423325 Mtr8g2405 8 34422147 34423325 ECH