Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g2394 ATGGCAACCAAGTGCATGCACGTTTTTGATAGATTGCTTCTTTGGTTTGCCACTTGTTGGAAGAAAAATAGCACACTAACAGGCAGAAGAAAATTCCACAAGGATGTGGAAAAAGAAGATTTCCAGTATTCAACTACTCAATGTCTCTCATCCTATTACAGTGTCTTTGTTGTTCGCCTAGCAATCATGGTTATGCTAGCTATCTTGATTGGTCTACTCACTATCCTAACATGGCATTTCACAAAGATTTATACAACGAAGTCTCTAAATAGTTTGGCTTACGACCTGCGTTACGAACTTCTGCAACGTCCCATCTTGAGGATGTGGAATATTTTGAACTCTACTGCTGAAATCACAACTGCTCAAGTTAAGTTGTCTGAGTATGTTATCAGAAGCCACGGTAACCTAGCCACTCAAGCAGAGCAAGTTGAGATGTATGAATCCATGAGGGCTGTCACATGGGCACTGTTTGCTAGTCGAAAAGCTCTCAACTCGATAACTGTCAAGTATAGGAATGGTTTTGTCCAAGCATTTCATAGAGACTTGAAGGATAATAATATTTTTTACATCTACACTGATCTTTCATATAATGAGACCAATTCATTTGCAGCACATGAAGACACTAATAGCAACAAGTCTGCGATTTGGTACCGGGAACAGCTTGATCCTGTCAATGGCGAGAAAATTGGAAAAGCAATGAAGATTGCACCAGAAGACTCAATAAGTATAGCTGGCCTGTCTCAAGTACCTGACGGTGTAGCTTCGTGGCACGTTTCTGTGGGCAAGTTTACAGATTCACCGTTACTTTCAGCAGCATTGCCAGTTTGGGATTCTTCTAATAAAAGCATTGTTGCGGTTGTGGGAGTTACAACTGCACTTTATAGTGTAGGGCAGTTAATGAAGGAACTAGTTGATAAGCATAGTGGTCATATGTATTTGACCTCTCAAGAGGGCTATTTGCTTGCAACTTCCACAAATGACCCTCTACTTACAAATTCAACAAAGAAACCTAAGCTTAAAATGGCTGTTGACTGTGATAACGAAGTAATAAGAGAGGGAGCGATGTGGCTAAAGAAAACATACGAGAACAATTTCCCTCCAAGTCATGAAGTTCATGAAGAGAATGCCAGGCTAGGTCACCAGCAATATTACATTGACTCATTCTTCCTAATCTTGAAAAAGCTTCCTTTGGTGGGTGTAATAATCATACCAAGAAAGCATATCATGGGGCAGGCAGATGAAAGAGCATTTAAAACATTGGTTATTCTGATATCTGCATCATTGTGTATTATTGTCATTGGATGTGTTTGCATTTTGATATTGACAAATGGAGTATCAAAAGAAATGAATCTAAGAGCAGAATTAATCAGTCACCTAGAAGCAAGAAGGAAGGCGGAGGCATCAAGCAACTATAAAAGCCAATTTCTTGCAAATATGAGTCATGAACTGAGGACACCGATGGCAGCAGTAATCGGATTACTTGACATTCTTTTGTCGGATGATCGTCTCACAAATGAACAATGTGCAACTGTTACTCAAATAAGAAAATGTTCAACCGCATTGCTCCATTTACTCAATAACATCTTGGATATAAGCAAGGTGGAATCTGGAAAACTTGTCCTAGAAGAGGCAGAATTTGACTTTGGAAGGGAACTTGAAGGGCTTGTAGATATGTTTTCTGTGCAATGCATTAACCACAATGTAGAAATTATTTTAGACCTTTCTGATGACATGCCAAAGCTAGTTCGGGGAGATTCTGCGAGAGTGGTTCAAATTTTTGCAAATTTGATCAATAACTCAATCAAATTTACTCTATCCGGTCACATTATTCTGAGAGGATGGTGTGAAAATCCAAATTCTTACGGTGATAGTGAAAATTTTACCCTGGAGCAGAAGCCATTCGGATGTTCTCGGAAGACCAAAATGAAGCAGCATGAGAACCATTCAAAGAAGGCTTCTAATATTGATAACAAAATGATACTTTGGTTTGAAGTTGATGACACAGGCTGTGGTATTGACCCGAGTAAATGGGATTCTGTATTTGAAAGCTTTGAGCAAGCTGATCTATCAACTACTAGACTGCATGGAGGCACTGGTCTTGGTCTTTGCATTGTTAGATCCTTGGTTAATAAGATGGGTGGAGAAATCAAGATTGTCAAAAAGGAAGGCCCAGGAACACTAATGCGATTATACATGCAACTCACCGCACCCGTGGATGCCACAGAACAACATTGTCAAGTCGATTTTGCTAACAATAACTTAATGGTACTTCTTGCACTGCATGGCAACATGAGTAGATTAATTACATCTAAGTGGTTACAGAAAAACGGCGTGCTCACTATGGAAGCATCTGAATGGAATGGATTAACACAAATTCTAAAAGAACTATTTGAAGCAAAAACTTCAACTCATAACAACGACTTTGATACTCACTTTCCAGCTCCGGAGGGTCTGAATTCTAAATTTATTAGCATACAGGAATTGCCAAACCCAACATTTGTCATTGTTGTGGATATTGATCTACTAGACTTGAGCACAGATATATGGAAAGAACAACTTAACTTCCTTCACAAATACTACGCGCGAGCGAAATTCGTATGGTTACAAAACCATGACTCGTCCAATACCGTAAAGACGGAGCTTCGCAAGAAAGGACATATACTAACTGTCAACAAACCTCTTTACAAAGCAAAGATGATTCATATTTTGGAAGACGTCATAAAGGAAAGAAACGTTGAAGTACAAAAGAAAAATATGAAAGAGGATGATTTGCATGAGAGTCTTGAGATTGAATATACTCATCATTGTGATGTTGCAAGCTCAGATGGTTCTGACATATCTGAAATTGGTAGTTCTAATCTTGTAACTGCCAATGGAGAGAAACAAAGAGAAGAGGTAGTTAGAATCAATCCATCATCACTATACCAGAAAAGTAACTGCTTATTAGGATTAAGTAATGGATACATGGAACATAAAGAAGCATTTATTTCAACAAGAGCAAAAGGTGAAGATTCTAAAGGTGGTGAAACAAGTAGGGTTAGTGGTTCAAGTAAAGCTATGAATGGAAAGAAGTCTCTTGAAGGTTTGAGGATATTGCTTGCAGAAGATACAGCAGTAATTCAAAGGGTGGCAACCATAATGCTTGAAAAAATGGGAGCCACCGTTGTTGCTGTAGGCGACGGACAACAGGCGGTGGATGCTCTAAATGGCATGCCTGGTGTTGAAAGAAACACAATAACATCTCAAACTGAGATTCTAAGTTTCCCTTCATATGACTTGATCCTAATGGATTGTCAGATGCCAAAGATGGATGGATATGAGGCAACAAAAGAAATAAGGAAATCAGAAATTGGAACTTCATTCCACATTCCAATCGTCGCTCTTACGGCTCATGCAATGTCATGTGATGAAGCCAAATGTTTAGAAGTGGGCATGGATGCTTATTTAACCAAGCCAATTGACTTTAAGCTGATGGAGTCTACCATTCTTTCACTCACAAAGAGAGAAACCTTGACATCTTAA 3522 0.3898 MATKCMHVFDRLLLWFATCWKKNSTLTGRRKFHKDVEKEDFQYSTTQCLSSYYSVFVVRLAIMVMLAILIGLLTILTWHFTKIYTTKSLNSLAYDLRYELLQRPILRMWNILNSTAEITTAQVKLSEYVIRSHGNLATQAEQVEMYESMRAVTWALFASRKALNSITVKYRNGFVQAFHRDLKDNNIFYIYTDLSYNETNSFAAHEDTNSNKSAIWYREQLDPVNGEKIGKAMKIAPEDSISIAGLSQVPDGVASWHVSVGKFTDSPLLSAALPVWDSSNKSIVAVVGVTTALYSVGQLMKELVDKHSGHMYLTSQEGYLLATSTNDPLLTNSTKKPKLKMAVDCDNEVIREGAMWLKKTYENNFPPSHEVHEENARLGHQQYYIDSFFLILKKLPLVGVIIIPRKHIMGQADERAFKTLVILISASLCIIVIGCVCILILTNGVSKEMNLRAELISHLEARRKAEASSNYKSQFLANMSHELRTPMAAVIGLLDILLSDDRLTNEQCATVTQIRKCSTALLHLLNNILDISKVESGKLVLEEAEFDFGRELEGLVDMFSVQCINHNVEIILDLSDDMPKLVRGDSARVVQIFANLINNSIKFTLSGHIILRGWCENPNSYGDSENFTLEQKPFGCSRKTKMKQHENHSKKASNIDNKMILWFEVDDTGCGIDPSKWDSVFESFEQADLSTTRLHGGTGLGLCIVRSLVNKMGGEIKIVKKEGPGTLMRLYMQLTAPVDATEQHCQVDFANNNLMVLLALHGNMSRLITSKWLQKNGVLTMEASEWNGLTQILKELFEAKTSTHNNDFDTHFPAPEGLNSKFISIQELPNPTFVIVVDIDLLDLSTDIWKEQLNFLHKYYARAKFVWLQNHDSSNTVKTELRKKGHILTVNKPLYKAKMIHILEDVIKERNVEVQKKNMKEDDLHESLEIEYTHHCDVASSDGSDISEIGSSNLVTANGEKQREEVVRINPSSLYQKSNCLLGLSNGYMEHKEAFISTRAKGEDSKGGETSRVSGSSKAMNGKKSLEGLRILLAEDTAVIQRVATIMLEKMGATVVAVGDGQQAVDALNGMPGVERNTITSQTEILSFPSYDLILMDCQMPKMDGYEATKEIRKSEIGTSFHIPIVALTAHAMSCDEAKCLEVGMDAYLTKPIDFKLMESTILSLTKRETLTS* 1174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g2394 1173 Pfam Response regulator receiver domain 1031 1159 IPR001789 GO:0000160
Mtr8g2394 1173 Gene3D - 459 538 - -
Mtr8g2394 1173 Gene3D - 1010 1167 - -
Mtr8g2394 1173 CDD HisKA 472 533 IPR003661 GO:0000155|GO:0007165
Mtr8g2394 1173 ProSiteProfiles Response regulatory domain profile. 1030 1166 IPR001789 GO:0000160
Mtr8g2394 1173 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 526 732 IPR036890 -
Mtr8g2394 1173 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 584 735 IPR003594 -
Mtr8g2394 1173 MobiDBLite consensus disorder prediction 999 1020 - -
Mtr8g2394 1173 ProSiteProfiles Histidine kinase domain profile. 478 736 IPR005467 -
Mtr8g2394 1173 SMART HKATPase_4 584 736 IPR003594 -
Mtr8g2394 1173 Gene3D - 539 738 IPR036890 -
Mtr8g2394 1173 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 458 538 IPR036097 GO:0000155|GO:0007165
Mtr8g2394 1173 SMART HisKA_10 471 537 IPR003661 GO:0000155|GO:0007165
Mtr8g2394 1173 CDD REC_hyHK_CKI1_RcsC-like 1031 1162 - -
Mtr8g2394 1173 PRINTS Bacterial sensor protein C-terminal signature 661 675 IPR004358 GO:0016310|GO:0016772
Mtr8g2394 1173 PRINTS Bacterial sensor protein C-terminal signature 679 689 IPR004358 GO:0016310|GO:0016772
Mtr8g2394 1173 PRINTS Bacterial sensor protein C-terminal signature 696 714 IPR004358 GO:0016310|GO:0016772
Mtr8g2394 1173 PANTHER OSMOSENSOR HISTIDINE KINASE 1 999 - -
Mtr8g2394 1173 PANTHER OSMOSENSOR HISTIDINE KINASE 1006 1167 - -
Mtr8g2394 1173 PANTHER TWO-COMPONENT HISTIDINE KINASE 1 999 - -
Mtr8g2394 1173 PANTHER TWO-COMPONENT HISTIDINE KINASE 1006 1167 - -
Mtr8g2394 1173 SMART REC_2 1029 1162 IPR001789 GO:0000160
Mtr8g2394 1173 Pfam His Kinase A (phospho-acceptor) domain 472 537 IPR003661 GO:0000155|GO:0007165
Mtr8g2394 1173 SUPERFAMILY CheY-like 1027 1168 IPR011006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g2394 Mtr-Chr8 34326770 34333098 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g2394 8 1167 Histidine Kinase Gene Family AT2G17820 63.849 0.0 1494
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Mtr8g2394 HATPase_c 8.5e-22 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g2394 - - gmx:100801970 1868.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g2394 8 34326770 34333098 Mtr8g2394 8 34326770 34333098 ECH
Mtr5g0893 5 8884040 8891094 Mtr8g2394 8 34326770 34333098 PCT