Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g2363 ATGGCTGATTCACCTCCTCCAAGGAATTCAAGGTCTCCTTCACCTTCACCATGGAAAGCTCAATCGAGATCAAGATCAAGGTCAAGGTCTGTTCCAAGACAAAGACCAAGATCTGACTCCAGAGGCCGTGGCAGATCAAGGTCTCGAAGTCCTGTAAGGGAGGTCAATGCTACAAATCCTGGTAATACACTATATGTTACCGGTCTATCTTCAAGGGTCACCGACAGAGACCTAGAGGACCATTTTTCTAAGGAGGGAAAAGTTGCTTCATGTTTTCTTGTGGTGGAGCCACGTACCCGAATTTCTCGTGGTTTCGCTTTTGTTACAATGGATTCCCATGAGGATGCTGAACGTTGTATCAAGCATCTCAATCAATCAGTTTTAGAGGGTCGCTACATCACTGTAGAACGGTCAAGAAGAAAGCGTGCAAGAACTCCAACACCAGGGCACTATCTTGGGCTGAAAAATACTAGAGACTATGGCCCTCGTGGTGATCATCGCGGTGACCATCGTGGTGACTTTCGTGGTGACCATCGTGGTGACTTTCGTGGTGATCATCGTGGTGACTATCGCAGTGATCATCGTGGTGACTATCGCGGTGACTACCGAGGTGATCGGGGAAGGAATCGTGGTGGTTCTGGTCGTGTTGATTATTCAGATCGTAGGTCTCCAAGGCGTTCACCATATCGCGGTGGCCACGATCATTCACCACAGCGCTCACCCTATGTTGGAAGGTCTAGGAGGGAGAGATCTAGGTCCATTCCTCGTTCTCCTTATAGCCCAGACAGGAGGTATGCTGCTGGATCTAGGTGA 813 0.4908 MADSPPPRNSRSPSPSPWKAQSRSRSRSRSVPRQRPRSDSRGRGRSRSRSPVREVNATNPGNTLYVTGLSSRVTDRDLEDHFSKEGKVASCFLVVEPRTRISRGFAFVTMDSHEDAERCIKHLNQSVLEGRYITVERSRRKRARTPTPGHYLGLKNTRDYGPRGDHRGDHRGDFRGDHRGDFRGDHRGDYRSDHRGDYRGDYRGDRGRNRGGSGRVDYSDRRSPRRSPYRGGHDHSPQRSPYVGRSRRERSRSIPRSPYSPDRRYAAGSR* 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g2363 270 CDD RRM_RBMX_like 61 140 - -
Mtr8g2363 270 SMART rrm1_1 63 136 IPR000504 GO:0003723
Mtr8g2363 270 Gene3D - 7 146 IPR012677 -
Mtr8g2363 270 PANTHER RNA RECOGNITION MOTIF 2 266 - -
Mtr8g2363 270 MobiDBLite consensus disorder prediction 240 257 - -
Mtr8g2363 270 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 62 140 IPR000504 GO:0003723
Mtr8g2363 270 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 64 133 IPR000504 GO:0003723
Mtr8g2363 270 SUPERFAMILY RNA-binding domain, RBD 58 171 IPR035979 GO:0003676
Mtr8g2363 270 MobiDBLite consensus disorder prediction 1 63 - -
Mtr8g2363 270 MobiDBLite consensus disorder prediction 32 50 - -
Mtr8g2363 270 MobiDBLite consensus disorder prediction 138 270 - -
Mtr8g2363 270 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 2 266 - -
Mtr8g2363 270 MobiDBLite consensus disorder prediction 159 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g2363 Mtr-Chr8 34087723 34090770 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g2363 31 144 Eukaryotic Initiation Factors Gene Family AT1G49760 28.070 4.13e-09 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g2363 K12897 - gmx:100800398 252.677