Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g2324 ATGGGAGGTGACGGTGCCGTTGAAGATTCCGCTTCAGAATCGAAGACCGAAGTTAACATCAATGTTCGATGCTCTAACGGTACAAAGTATTCCGTTCAGGTTTCTCTCGATTCCACGGTTGGATCGTTCAAGGATCTCATTGCGCGTAACTGTGATATCCCCGCACAACAACAACGTCTCATCTACAAAGGTCGTATATTGAAGGATGATCAAACGCTTCAAAGCTATGGTTTGGAGGCAGATCATGCTGTGCATTTGGTTCGTAGCTTTGCACCTACCAATGCGAGTGGTGGGACCAATAGTAGTGGCACCAATACCACAACAAATGATGCCGCAGGCGCTGGAGCTAATGCTGCTGGGGGTTTAGGAGGGCTCGGTTTTGGAGCTTCATTGTTTCCTGGACTAGGTGCCAATGGCACTGGGAGAAATACCTTATTTGGCGAGGGATTTCCAGATCTTGAACAAATGCAGCAACCATTTATTTCAAATCCCAATTTAATGAGAGAAATGATGAATTCACCTGCTATGCAGAATCTAGTAAGTAACCCCGAGATAGTGCGGAATCTTATAATGAACAACCCACAGATGCAAGAGCTCATGGATCGAAACCCTGAGCTAGCACACGTACTTAATGATCCCAGTACTCTCCGCCAGACCCTTGAAGCTACAAGGAACCCTGAGATCATGCGTGAAATGATGAGAAATACAGATAGGGCAATGAGCAACATTGAATCATCTCCTGAGGGATTCAACATGCTGAGGCGCATGTATGAAAACGTTCAAGAACCATTTTTAAATGCCACTACAATGGCCGGTAATACAGCACTTTCAGGGACTCAGGGTGGCCTATCCAGGGACCAATCAACTAATCCCTCAACCACTAATTCTGAAACAACTGCTGGCTCTCCCATTCCCAATGCTAACCCACTTCCTAATCCTTGGTCCTCTACAGCTGGAGCTCCCCAAAATAACACCAGGAGTTCAACCACTGGTGGGGATGCTAGGCAGCAAGCACCTACTGGCTTAGGAGGGCTTGGTTTGCCTGGCCTTGAAGGCATGCTGGGTGGTAGTGGTATGCCAGATCCTGCTTTATTGACTCAATTAATGCAAAATCCAGCTATCTCACAAATGATGCAAAGTATGCTTTCCAACCCACAAACTTTGAGTCAGATTCTTGGTGCTGCTAATACTGAACAACGTGGTGGCATGCCTGATTTAAATTCTCTTAGAGATGTGATGCAAAATCCTGAGTTCCTACGTTTGTTTCAATCACCTGAGACAATGCAGCAACTCATGTCTTTCCAGCAAGCTCTTCTGTCTCAGCAACAATCAACACGGGAATCGGGTCAAACTGGTCAAACTGGTGGAGGGACTGGACCATTTAACAACATGGGGTTGGAGATGTTATCCAGCATGTTTGGTGGCCTTGGAGCTGGTGGCCTTGGAGCTGCTCCAAATAGATCAAATGAGCCACCAGAGCAATTGTATGCCACCCAGCTTACACAGCTTCAAGAGATGGGATTCTTTGACACACAAGAGAACATAAGGGCTCTTATTGCCACTTCAGGGAATGTTCATGCGGCCGTTGAACGTCTTTTAGGGAACACTGGTCAGTAG 1617 0.4657 MGGDGAVEDSASESKTEVNINVRCSNGTKYSVQVSLDSTVGSFKDLIARNCDIPAQQQRLIYKGRILKDDQTLQSYGLEADHAVHLVRSFAPTNASGGTNSSGTNTTTNDAAGAGANAAGGLGGLGFGASLFPGLGANGTGRNTLFGEGFPDLEQMQQPFISNPNLMREMMNSPAMQNLVSNPEIVRNLIMNNPQMQELMDRNPELAHVLNDPSTLRQTLEATRNPEIMREMMRNTDRAMSNIESSPEGFNMLRRMYENVQEPFLNATTMAGNTALSGTQGGLSRDQSTNPSTTNSETTAGSPIPNANPLPNPWSSTAGAPQNNTRSSTTGGDARQQAPTGLGGLGLPGLEGMLGGSGMPDPALLTQLMQNPAISQMMQSMLSNPQTLSQILGAANTEQRGGMPDLNSLRDVMQNPEFLRLFQSPETMQQLMSFQQALLSQQQSTRESGQTGQTGGGTGPFNNMGLEMLSSMFGGLGAGGLGAAPNRSNEPPEQLYATQLTQLQEMGFFDTQENIRALIATSGNVHAAVERLLGNTGQ* 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g2324 538 MobiDBLite consensus disorder prediction 437 460 - -
Mtr8g2324 538 Pfam Ubiquitin family 20 89 IPR000626 GO:0005515
Mtr8g2324 538 MobiDBLite consensus disorder prediction 437 462 - -
Mtr8g2324 538 CDD Ubl_Dsk2p_like 18 90 - -
Mtr8g2324 538 Pfam UBA/TS-N domain 496 532 IPR015940 -
Mtr8g2324 538 MobiDBLite consensus disorder prediction 272 363 - -
Mtr8g2324 538 ProSiteProfiles Ubiquitin domain profile. 18 87 IPR000626 GO:0005515
Mtr8g2324 538 SUPERFAMILY Ubiquitin-like 9 105 IPR029071 -
Mtr8g2324 538 PANTHER UBIQUITIN DOMAIN-CONTAINING PROTEIN DSK2A-RELATED 8 538 - -
Mtr8g2324 538 Gene3D - 6 103 - -
Mtr8g2324 538 MobiDBLite consensus disorder prediction 272 336 - -
Mtr8g2324 538 SMART uba_6 496 534 IPR015940 -
Mtr8g2324 538 SMART CBM 193 232 IPR006636 -
Mtr8g2324 538 SMART CBM 139 180 IPR006636 -
Mtr8g2324 538 SMART CBM 338 391 IPR006636 -
Mtr8g2324 538 SMART CBM 396 431 IPR006636 -
Mtr8g2324 538 CDD UBA_PLICs 496 534 - -
Mtr8g2324 538 Gene3D - 481 538 - -
Mtr8g2324 538 Gene3D - 187 246 - -
Mtr8g2324 538 SMART ubq_7 18 89 IPR000626 GO:0005515
Mtr8g2324 538 PANTHER UBIQUILIN 8 538 - -
Mtr8g2324 538 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 490 535 IPR015940 -
Mtr8g2324 538 SUPERFAMILY UBA-like 492 534 IPR009060 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g2324 Mtr-Chr8 33721669 33727715 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g2324 18 87 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 32.857 2.11e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g2324 K04523 - gmx:100776447 750.355