Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g2323 ATGGAAAACTATGAAAATGATTCATGTACATCTTTGTTACCAACTAATGGTGCTCAGAGTGATGGTGTGACCAGACCCACGAGCAACGATTATAAGCCAAATATTTTAGAAGATAAAGAAGTTGCTGCATGCAAATTGAAGGGCGTCGCTGAAAGTGTAAACATCAATGTTCGTTACTTCAATGGTTCAAAGTTTTGTGTTGAAGCTGCACTAGAATCCACAGTTGAATCCTTCAAACAGCTTATCATTGGAAACTGTGACATCCCAATCCAAAATCAAAGACTCATTTACAAGGGAAACATCTTGCAGAATAATCAATCCCTGCAAAGCTATGGTTTGGGGCCAAATCATACTGTCTATTTGGTTCGTTGTTATGCACCCACCGATACAAATGATGGGACCAACAATATGGACATTGATGCTGATGGTGAGAGGGATGGCTTACTTGGGGAAGGATTTTCAGATTTTGAACCAATGCAGCTCTGCCATCCACTACATGCTTCCATTAATCCTCACTTTTTAAGAGAATTTCTAAGCACACCGGATCTGCAGTGCCTAGTTTTGAATCCTGATGTGATGTGGAGTATTTTAACCAACAGTCAAGAGCTGTCGGGCATAGTTTTTGATCCTAGCAGTGTGATCCGGGTTCTTGAAGATGTAAGGATCCCTGGGATTGTGAACGAAATAAGGAGACTAGCTGACCTCGAACTGGGCAGCATTGAATCTATTCCTGGGGGATTAAACCAGTTGAGGTACATTTATGAAGACATTGTAGAAGAAAATGTCGCTGCAGGAATCTATGAAAACCAAGCCAGGGATCAGTCAAATGGTAGTGAAACAAATGCTGGTTCTTCGTTACCAAATACTACTCCACTTCCCAATCCCTGGTCTTTTACTGGATTTGAAGGTTACCAGAGTAACATAAGAAGATCAATCACCGGTGAGAATGAGGATGATTATCTACAGCGCGAACCTGTTGTCTTAGAACCAATTGATTTTTCCAATGTTGATAGCCTATTGGGTGGACATGTTATGGCAAATGCTAATTTATCGACCCAATTAGTGCAAGATCAACTACAAGAGTTTATACCTTCCCACCCAGAGTTTGGTGGTCGTAATGCTGAACAAAATGGTGAGGCTGATTTAAGTTTTCTCAGAGAAGAGATTCAAAATCCAGATTTCCTTTCTCTGTATTCACAACCTGAGACATTGCAGCAACCATTGTCTTCCGAACAAGATCTTCTGCCTCATCTTAATCAGCAGGAATCAATACAGGAACCGAATCAGACAACTGGAGGCACTGGCAGTGAAGCAGCAGAGCAATTGTATGCCACCCAACTTTCACAGCTTCAAGAGATGGGATTCTTTGACACACAAGAAAACATAAGAGCTCTTATTGCCACTTCAGGGGATGTTCATGCCGCCATTCAACGTCTTTCGAGGAACTCCAATCAGTAG 1458 0.4163 MENYENDSCTSLLPTNGAQSDGVTRPTSNDYKPNILEDKEVAACKLKGVAESVNINVRYFNGSKFCVEAALESTVESFKQLIIGNCDIPIQNQRLIYKGNILQNNQSLQSYGLGPNHTVYLVRCYAPTDTNDGTNNMDIDADGERDGLLGEGFSDFEPMQLCHPLHASINPHFLREFLSTPDLQCLVLNPDVMWSILTNSQELSGIVFDPSSVIRVLEDVRIPGIVNEIRRLADLELGSIESIPGGLNQLRYIYEDIVEENVAAGIYENQARDQSNGSETNAGSSLPNTTPLPNPWSFTGFEGYQSNIRRSITGENEDDYLQREPVVLEPIDFSNVDSLLGGHVMANANLSTQLVQDQLQEFIPSHPEFGGRNAEQNGEADLSFLREEIQNPDFLSLYSQPETLQQPLSSEQDLLPHLNQQESIQEPNQTTGGTGSEAAEQLYATQLSQLQEMGFFDTQENIRALIATSGDVHAAIQRLSRNSNQ* 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g2323 485 SMART ubq_7 53 124 IPR000626 GO:0005515
Mtr8g2323 485 SUPERFAMILY Ubiquitin-like 47 142 IPR029071 -
Mtr8g2323 485 Pfam Ubiquitin family 55 122 IPR000626 GO:0005515
Mtr8g2323 485 PANTHER UBIQUILIN 439 484 - -
Mtr8g2323 485 PANTHER UBIQUILIN 142 437 - -
Mtr8g2323 485 PANTHER UBIQUILIN 46 134 - -
Mtr8g2323 485 Pfam UBA/TS-N domain 443 479 IPR015940 -
Mtr8g2323 485 CDD UBA_PLICs 443 479 - -
Mtr8g2323 485 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 437 482 IPR015940 -
Mtr8g2323 485 MobiDBLite consensus disorder prediction 270 296 - -
Mtr8g2323 485 Gene3D - 427 485 - -
Mtr8g2323 485 MobiDBLite consensus disorder prediction 1 31 - -
Mtr8g2323 485 PANTHER UBIQUITIN DOMAIN-CONTAINING PROTEIN DSK2A-RELATED 142 437 - -
Mtr8g2323 485 PANTHER UBIQUITIN DOMAIN-CONTAINING PROTEIN DSK2A-RELATED 46 134 - -
Mtr8g2323 485 PANTHER UBIQUITIN DOMAIN-CONTAINING PROTEIN DSK2A-RELATED 439 484 - -
Mtr8g2323 485 SUPERFAMILY UBA-like 440 479 IPR009060 GO:0005515
Mtr8g2323 485 ProSiteProfiles Ubiquitin domain profile. 53 122 IPR000626 GO:0005515
Mtr8g2323 485 MobiDBLite consensus disorder prediction 1 32 - -
Mtr8g2323 485 Gene3D - 49 135 - -
Mtr8g2323 485 SMART uba_6 443 481 IPR015940 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g2323 Mtr-Chr8 33708020 33713128 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g2323 K04523 - gmx:100776447 345.125
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g2323 8 33708020 33713128 Mtr8g2323 8 33708020 33713128 ECH
Mtr5g0963 5 9509055 9515466 Mtr8g2323 8 33708020 33713128 PCT