Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g2311 ATGCCGAAAGTTAAAGCTGATTCCAAACCCGCTGATAACCGCTTGAAGCGCAAAGGTGCTGGAGCTGGAAGGAAACAGACGAAGAAAGCAGCGAAGGATCCTAACAAGCCAAAGAGGCCTCCAAGTGCTTTCTTCGTTTTCATGTCCGATTTTAGAGAACAGTATAAGAAGGATCATCCCAACAACAAATCCGTTGCCGCTGTCGGAAAAGCTTGCGGTGAAGCATGGAAATCGATGTCTGAAGAAGACAAGGCTCCTTATGCTGCTAGGGCATTGAAGAAGAAAGAAGAGTATGAGGTTGCTACACAAGCCTACAACAAGAAACTGGAGGGAAAAGACGAGGAAGATGGTTCTGACAAGTCAAAATCTGAAGTCAATGATGAGGATGAAGATGAGGAGGATGAGGATGATGATGAAGATGATGAGTGA 429 0.4522 MPKVKADSKPADNRLKRKGAGAGRKQTKKAAKDPNKPKRPPSAFFVFMSDFREQYKKDHPNNKSVAAVGKACGEAWKSMSEEDKAPYAARALKKKEEYEVATQAYNKKLEGKDEEDGSDKSKSEVNDEDEDEEDEDDDEDDE* 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g2311 142 SUPERFAMILY HMG-box 24 108 IPR036910 -
Mtr8g2311 142 MobiDBLite consensus disorder prediction 104 142 - -
Mtr8g2311 142 CDD HMGB-UBF_HMG-box 37 101 - -
Mtr8g2311 142 Gene3D High mobility group box domain 21 133 IPR036910 -
Mtr8g2311 142 MobiDBLite consensus disorder prediction 1 42 - -
Mtr8g2311 142 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 4 140 - -
Mtr8g2311 142 SMART hmgende2 36 107 IPR009071 -
Mtr8g2311 142 MobiDBLite consensus disorder prediction 125 142 - -
Mtr8g2311 142 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 4 140 IPR031061 -
Mtr8g2311 142 MobiDBLite consensus disorder prediction 1 19 - -
Mtr8g2311 142 Pfam HMG (high mobility group) box 37 106 IPR009071 -
Mtr8g2311 142 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 37 106 IPR009071 -
Mtr8g2311 142 MobiDBLite consensus disorder prediction 104 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g2311 Mtr-Chr8 33580497 33582047 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Mtr8g2311 HMG_box 8.6e-23 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g2311 K25507 K22507 ahf:112797235 199.519
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g2311 8 33580497 33582047 Mtr8g2311 8 33580497 33582047 ECH
Mtr5g0977 5 9714661 9716132 Mtr8g2311 8 33580497 33582047 ECH