Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g2303 ATGACTATTCAGACAAGACAGTACGACATTGTGTTTGTGGAATGGCGACTTCTACCCCAGCTTTTGACCATTGGGTCTTACCCCAGCAGTGGCTTGATTGCATCTCCAGTGACTTTATCCCCAATGAAAGTTTCGAGCGTTCGCACAGTGATGCCGGACTATTCTCCTTGTGGACATGCCCAATCTGAACAACACAACATGAATAAAGTTTGGCTTCTTGTACTAATGATGTTCTACAATAGCCTTCCTATAAAAACAATCAGCAATGTTTCTGCAAGACCAAGTACTATCAATATTGGTGCAATTTTATCTTTCAATTCAACCATTGGAAGAGTGGCTAAAGTTGCCATAGAAGCAGCAGTGGATGATATAAATTCCAATCCAAAGGTTCTCAGTGGAACTAAGCTTAATATTTCAATGCTTGACACTAAATCTTCCCCTGGATTTCTAGGAATCGTTGATTCATTACTGTTGATGGAGAAAGAGACTGTGGCCATAATTGGTCCACAGTTTTCAGTGATGGCTCATGTGATTTCACATATTGCAAATGAGATGCAAGTACCTATACTATCATTTGCAGCAACAGATCCAACACTAACTTCACTAGAGTTCCCATATTTTGTTAGGACAACACAGAGTGATCTGAATCAAATGGCTGCTGTGGCAGACATTGTTGACCATTTTCAATGGAGAGATGTGATAGCAATTTTCATAGATGATGATCATGGAAGAAATGGGATAGCTGCATTAGGTGATAAGCTAGCAGAGAAACATAGTAAAATATCATATAAAGCAGCTCTTAGACCTGATCAACTCACCACTGATGAAATAAACAATGCATTATTTAAGGTAGCTTTGATGGAGTCTAGAGTAATTGTCCTTCATGTAACCCTTCATTTTGGTCTACAAGTACTTCACTTGGCTCAATCACATGAAATGATGGGAAGTGGTTATGTATGGATAGCCACTGATTGGCTTTCTACGATACTAGATTCCGATCCTTCGTTGTCCACATCTGCAACAATGAATGACATGCAAGGTGTTATCACCTTGAGGATGTACACACCAGAATCAAAAAATAAAAGAAATTTCACTTCTAGATGGAACAGAAACCTGAGCCATAACATAGGTTCTGATCATGACCATAATCATGGGCCTTCTTTTGGTTTAAACATGTTTGGTTTATACGCCTATGACACTGTTTATGTTCTTGCTTCTGCACTAGATGCATTTTTTAACAGTGGAGGAACTTTGTCATTTTCAAATGATTCAAATCTAAACATGTTAAGAGGAGACACCCTTCATTTGGATAATATGAAGGTCTTTGTTAATGGTAGTATGTTGCTTCAAAAAATCTTAGAGGTCAACATAACTGGTTTAACAGGCAATATTATGTTTGATTCAAATGGAAACTTAATGAATCCATCATATGAAATCATTAATGTCATAGGTAGTGGAATTAGAAGGATTGGTTTTTGGTCTGAATCTTATGGACTCCACACTGGTGTGGAATCTCCTAATCATTCAAATTTAAGAAAAGGATTATATGGTGTCATATGGCCTGGTCAAACAACTCATACCCCGCGTGGTTGGGTTTTCGCTAGCAATGGAAGACGCTTGAAAGTTGGTGTGCCGCTTAAAATTAGTTACCATGAACTTGTGTCAAGAATTAAGGGTTCTGATATGTTTGCTGGTTATTGCATAGATGTTTTTACTGCTGCAGTTGAATTATTGCCTTATTCAGTTCCATGCAAATATATTCCAGTTGGTGATGGTAAAACCAACCCAACTTACACAGACATTCTCCATAAGATGACAGAGGGTGACTTTGATGCTGTGGTTGGGGACATTACAATTACCACAAACAGAACTAAGATAGTGGATTTTACACAACCATATTCTGAGTCAGGGCTAGTTGTTGTGGCACCTATCATGAAGTTGAAAGCAAGCCCATGGGCTTTCCTAAGACCATTTGCACCAATGATGTGGCTTGTCACAGGAGTGTTTTTCTTTGTTGTAGGATCTGTTGTTTGGATTGTAGAACGTCGCTTCAATGATGACTTTAGAGGCCCGGCTAAAAAGCAATTTGTAACCATTCTATGGTTTAGTTTTTCAACCATGTTTTCTACACATAGAGAGAAAACTGTGAGCACACTTGGTCGCTTATTGCTAATCATTTGGCTATTTGTGGTTATGATACTAAACTCTAGTTATACCTCAAGTCTTACCTCTATCCTAACGGTGGAGCAGCTATCTTCCTCAGTTAAGGGACTTGAAAGCTTAGCAACAAGCAATGATCGCATCGGTTACTTAAGAGGCTCATTCTCTGAAAATTATCTGACTCAGGAGCTCAACATACACAGATCAAGGCTTGTTCCTTTGAACTCTCCTTCAGAATATGAAAAGGCCTTGAAAGATGGACCAACTAATGGTGGTGTTGCCGCAATAGTAGATGAACGTGCATACATGGAAATCTTCTTAGAAATGAGATGTGAATTTGGTATCATTGGTCAAGAATTCACCAAGATGGGATGGGGCTTTGCCTTTCCACGGGATTCTCCCCTAGCAATTGACATGTCAACTGCAATTCTAAAACTATCAGAGAATGGAGGTCTCCAGAGAATTCATGACAAATGGCTGACAAGAAGTTCTTGCAGATCAGAAGAAGAAAAACAAGGCATGGACAGACTTGACCTACAAAGTTTTTGGGGCTTATTTCTTATAACTGGAATAGCATGCTTTGTTTCCCTATTTTGTTACGTTTTTCAAATGGCCTACAGCTATCGGAAGCATTACTCGAAGAACAATAACAACAACGTTCAATTCTCATCGCGTTCTGCTCGTCTTAGATCATTCCTTTCCTTTGTGAAAGAAAAAGAAGAGGAAGACAAATGCAGTGAAAATAGAATAAAAAAGGAAAAGTCGTCTAGCAGACGGGTAGCACATGAAGATGGACCGTTGGACTTGGATGACTCGAATGTTGGTGTCCATGTTGAAAATGATGCCTAA 3009 0.3902 MTIQTRQYDIVFVEWRLLPQLLTIGSYPSSGLIASPVTLSPMKVSSVRTVMPDYSPCGHAQSEQHNMNKVWLLVLMMFYNSLPIKTISNVSARPSTINIGAILSFNSTIGRVAKVAIEAAVDDINSNPKVLSGTKLNISMLDTKSSPGFLGIVDSLLLMEKETVAIIGPQFSVMAHVISHIANEMQVPILSFAATDPTLTSLEFPYFVRTTQSDLNQMAAVADIVDHFQWRDVIAIFIDDDHGRNGIAALGDKLAEKHSKISYKAALRPDQLTTDEINNALFKVALMESRVIVLHVTLHFGLQVLHLAQSHEMMGSGYVWIATDWLSTILDSDPSLSTSATMNDMQGVITLRMYTPESKNKRNFTSRWNRNLSHNIGSDHDHNHGPSFGLNMFGLYAYDTVYVLASALDAFFNSGGTLSFSNDSNLNMLRGDTLHLDNMKVFVNGSMLLQKILEVNITGLTGNIMFDSNGNLMNPSYEIINVIGSGIRRIGFWSESYGLHTGVESPNHSNLRKGLYGVIWPGQTTHTPRGWVFASNGRRLKVGVPLKISYHELVSRIKGSDMFAGYCIDVFTAAVELLPYSVPCKYIPVGDGKTNPTYTDILHKMTEGDFDAVVGDITITTNRTKIVDFTQPYSESGLVVVAPIMKLKASPWAFLRPFAPMMWLVTGVFFFVVGSVVWIVERRFNDDFRGPAKKQFVTILWFSFSTMFSTHREKTVSTLGRLLLIIWLFVVMILNSSYTSSLTSILTVEQLSSSVKGLESLATSNDRIGYLRGSFSENYLTQELNIHRSRLVPLNSPSEYEKALKDGPTNGGVAAIVDERAYMEIFLEMRCEFGIIGQEFTKMGWGFAFPRDSPLAIDMSTAILKLSENGGLQRIHDKWLTRSSCRSEEEKQGMDRLDLQSFWGLFLITGIACFVSLFCYVFQMAYSYRKHYSKNNNNNVQFSSRSARLRSFLSFVKEKEEEDKCSENRIKKEKSSSRRVAHEDGPLDLDDSNVGVHVENDA* 1003
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g2303 1002 CDD PBP1_GABAb_receptor_plant 98 499 IPR044440 -
Mtr8g2303 1002 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 79 966 - -
Mtr8g2303 1002 MobiDBLite consensus disorder prediction 966 1002 - -
Mtr8g2303 1002 Pfam Ligand-gated ion channel 882 913 IPR001320 GO:0015276|GO:0016020
Mtr8g2303 1002 CDD GluR_Plant 538 880 - -
Mtr8g2303 1002 Gene3D - 649 788 - -
Mtr8g2303 1002 Gene3D - 115 474 - -
Mtr8g2303 1002 PANTHER GLUTAMATE RECEPTOR 79 966 - -
Mtr8g2303 1002 Pfam Receptor family ligand binding region 115 484 IPR001828 -
Mtr8g2303 1002 SMART GluR_14 539 882 IPR001320 GO:0015276|GO:0016020
Mtr8g2303 1002 Gene3D - 534 648 - -
Mtr8g2303 1002 Gene3D - 213 499 - -
Mtr8g2303 1002 SUPERFAMILY Periplasmic binding protein-like I 92 531 IPR028082 -
Mtr8g2303 1002 SUPERFAMILY Periplasmic binding protein-like II 515 882 - -
Mtr8g2303 1002 Pfam Bacterial extracellular solute-binding proteins, family 3 563 881 IPR001638 -
Mtr8g2303 1002 PIRSF IGluLR_plant 65 995 IPR017103 -
Mtr8g2303 1002 Gene3D - 795 887 - -
Mtr8g2303 1002 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 110 126 - -
Mtr8g2303 1002 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 171 199 - -
Mtr8g2303 1002 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 303 326 - -
Mtr8g2303 1002 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 397 409 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g2303 Mtr-Chr8 33446455 33459434 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g2303 67 969 Ion Channels AT1G42540 55.965 0.0 1023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g2303 K05387 - gmx:100790502 1421.76