Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g2297 ATGACTAGAATATTATTACAATCCATTTCCTCCGCCGCACCACCGCCGGACTCCGCCGCCTCATTAGAATCCGACTTCGTCGTCATCCTCGCCGCTCTCCTCTGCGCTCTAATCTCCGTCGTGGGTCTCACCGCCATTGCCCGTTGCGCCTGGCTCCGCCGTACCCCCGTCGCCGGAGCATCACCGTCGGCGGCGGTGGCCAACAAAGGTCTCAAAAAGAAGGTTCTCAATTCACTTCCGAAATTCACCTACCTCGACGACACTCCCGGAAAATGGGTCGTCTCATCGGAGTGCGCCATTTGTATCTCGGAGTTCACCGCCGGTGAAGAGGTTCGGGTGCTTCCTCAGTGTGGTCATGGCTTCCACGTGGCATGTGTTGACACGTGGCTTGGGTCTCACTCTTCTTGCCCTTCTTGCCGTGCTCCGTTTGCCGTTGCTAGGTGTCAGAAATGTGGGCTTTATCAACCGACGGCTGCCGGAGAAGTTGCCGGTGAAACGGAACAGAAAACTGCCGGCGGCGAGAATGTAGAAGTTGTTGTTGTTAATGCTAATTGTAATGGTAATAGTGTTGATAGGCATAGGCACAATGTTCATAATGGCTTCTTGCCTTAA 612 0.5408 MTRILLQSISSAAPPPDSAASLESDFVVILAALLCALISVVGLTAIARCAWLRRTPVAGASPSAAVANKGLKKKVLNSLPKFTYLDDTPGKWVVSSECAICISEFTAGEEVRVLPQCGHGFHVACVDTWLGSHSSCPSCRAPFAVARCQKCGLYQPTAAGEVAGETEQKTAGGENVEVVVVNANCNGNSVDRHRHNVHNGFLP* 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g2297 203 PANTHER ANAPHASE-PROMOTING COMPLEX SUBUNIT 11 RING-H2 FINGER PROTEIN 1 183 - -
Mtr8g2297 203 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 60 145 IPR013083 -
Mtr8g2297 203 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 1 183 - -
Mtr8g2297 203 Pfam Ring finger domain 97 140 IPR001841 -
Mtr8g2297 203 SUPERFAMILY RING/U-box 77 145 - -
Mtr8g2297 203 ProSiteProfiles Zinc finger RING-type profile. 98 140 IPR001841 -
Mtr8g2297 203 CDD RING-H2_PA-TM-RING 97 140 - -
Mtr8g2297 203 SMART ring_2 98 139 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g2297 Mtr-Chr8 33356503 33357481 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g2297 1 151 C3H Transcription Factor Family AT1G20823 58.385 6.23e-59 182
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g2297 - - cam:101497131 316.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g1001 5 9960633 9961830 Mtr8g2297 8 33356503 33357481 PCT