Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g2263 ATGGGTTCCAATAGTAGCAAAGCCACTAGGAAGAGTAGTTCAAAGGGACTGAAAGGGTTTCATTCTTCTTGTCTTGGAACATGTTCTGGATCTCATGACAGTGATAATGAGGAACAGAATAAAGTAAATGGCAATGATGTTACATATGCTGATAATGGCAATCTATCTGACCGAGATGAGGTTAAAGCCGGCTACAGTGACAATACTCGCAGTTCTGTTCACGCTTCTTCAACTAATTTGTTGAATCCTACCAGTCGATTCCTTTCTCAGTTCGGCATCACTCCTGGTAATCAAAGCTCCAGATTTAGCATATTTACCGGTTCAAGGTCATCGAGGCCTTGTCCTGTTTCTTCTACAAGACTTTCAATATTTGGCAATGATGTTGAGCGTAATCTACATCCAGGACCTTGTAGCAGTTTGACTAACATAAATGAAACAACACGGTGTCATGAAGATACTGCAATTAATTTCAGGTCAAATGCCTCAGGATCAGGTTTGCCTTGCATCGGTGGCATTGGTGCAAGAGATGAATTGGAGATAAACTTATTTTCTCCGAGAATTCAAACGGAGACAGAACATACCAAGACTAGACATTTAGATCAGCGAAATGGAACTCGAGAACAAGTTGAAGAGAATGTTCGTTTTAGTCGAACTTTAAGTGTTGGAAGACTTCGTGACAGAGTCCTTCGTCGATCAACATTATCTGACGTTACCTTTTTCCCTCTGCAACAAGAGAGAGAACTCAGAGACGATATTCAGAATACTCTAAGGCAAACATTAGAGGCAGATTCAAGAGTGTCACCATCGGATCATAGTGCTTATAGTTGTTCTACATCCAGATATCCTCAATCTAGTATGTCTAACTCCATGTTTAGTAATCAAAACTATGACGTTGAGACCTCACAATTGCGAGAAGGTAGGTATCAGGATCTACTGGAGCATAGGTCCAATTTCCTTGAACGAAGAAGAAGAATACGGTCACAGGTCCGTTCTCTTCAGAGGTTGGGTAGCCGGCGTGAAAATCAATCTGCACATGAGAGATCATGTATCTTGTCTGGTCAACATAGAAGTGCTCGTTGTATGTGTCGATTCAGAAACCGTGACACTAATTCAAATGATGACACTGGTACTAGAGCTAGCATATCAAGAGTTGTTGTACTTGCAGAAGCCTTATTTGAGGTTCTGGATGAAATTCACCAGCAATCCGTAGTTTTATCTTCCCATCCTTCTGTATCTTCTATTGGATCTGTTCCTGCACCTATCAATGTTGTGGAGTCATTGCCTGTCAAGTTGTATGAGAAGTTTCATAAGCATCAAGAAGATGCTACACAATGCTATATATGCCTTGTAGAGTATAATGATGGAGACAGCGTGCGTGTTCTGCCTTGCAATCATGAATTTCATAGAACATGCATAGACAAATGGTTGAAGGAGATTCACAGGGTATGCCCACTATGTCGGGGGAACATCTGCATTTCTAACTCACCTCCAACTCGGAACTTTAGTGAATAA 1512 0.4114 MGSNSSKATRKSSSKGLKGFHSSCLGTCSGSHDSDNEEQNKVNGNDVTYADNGNLSDRDEVKAGYSDNTRSSVHASSTNLLNPTSRFLSQFGITPGNQSSRFSIFTGSRSSRPCPVSSTRLSIFGNDVERNLHPGPCSSLTNINETTRCHEDTAINFRSNASGSGLPCIGGIGARDELEINLFSPRIQTETEHTKTRHLDQRNGTREQVEENVRFSRTLSVGRLRDRVLRRSTLSDVTFFPLQQERELRDDIQNTLRQTLEADSRVSPSDHSAYSCSTSRYPQSSMSNSMFSNQNYDVETSQLREGRYQDLLEHRSNFLERRRRIRSQVRSLQRLGSRRENQSAHERSCILSGQHRSARCMCRFRNRDTNSNDDTGTRASISRVVVLAEALFEVLDEIHQQSVVLSSHPSVSSIGSVPAPINVVESLPVKLYEKFHKHQEDATQCYICLVEYNDGDSVRVLPCNHEFHRTCIDKWLKEIHRVCPLCRGNICISNSPPTRNFSE* 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g2263 503 Coils Coil 242 262 - -
Mtr8g2263 503 Pfam Ring finger domain 444 487 IPR001841 -
Mtr8g2263 503 SUPERFAMILY RING/U-box 423 493 - -
Mtr8g2263 503 MobiDBLite consensus disorder prediction 261 289 - -
Mtr8g2263 503 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 408 491 IPR013083 -
Mtr8g2263 503 CDD RING-H2_PA-TM-RING 444 487 - -
Mtr8g2263 503 ProSiteProfiles Zinc finger RING-type profile. 445 487 IPR001841 -
Mtr8g2263 503 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 3 63 - -
Mtr8g2263 503 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 64 502 - -
Mtr8g2263 503 SMART ring_2 445 486 IPR001841 -
Mtr8g2263 503 MobiDBLite consensus disorder prediction 1 33 - -
Mtr8g2263 503 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 64 502 - -
Mtr8g2263 503 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 3 63 - -
Mtr8g2263 503 MobiDBLite consensus disorder prediction 1 77 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g2263 Mtr-Chr8 32860837 32865106 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g2263 181 491 C3H Transcription Factor Family AT5G45290 58.805 1.98e-106 326
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g2263 - - cam:101492704 628.632
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g2263 8 32860837 32865106 Mtr8g2263 8 32860837 32865106 ECH
Mtr5g1080 5 10805223 10809944 Mtr8g2263 8 32860837 32865106 PCT