Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g2256 ATGGCTGATGATGCTGATTATCAACCTTTGTTCGATACCAAATTTGGTGTGATACTAATTGCCATGGGTTCAGCTAGCTTTGTGGTTACAATATACCATCTCATATTCATTTGCTGCAAACACGCATCCGAACAAGCGCGGCAGCATGAGCAACCAGCAACACAAACGCTGAGCACGGAAGAAGGAAGTTTGGTGTCACATCAGATTCCATCCTACAAGTATGAGAAGAAAAGGAATGATGATAATGATGATGATGATTGTGTGACTTGTGCTGTGTGCTTAGGAGACTTTGAGGAAGGTGAGGAGTTGAGGGCTATGCCTTCTTGCATGCACTCTTTCCATGTACCATGCATTGATATGTGGCTCCTTTCACATCTCAATTGTCCTGTTTGCCGTGCTGATGCCACGCCCTCCCCGGTGGTTCCCCACTGTTTACCGGAGGTTAGGTCCACCGAGGGGAATGTTGATTATGGCGTAAATATGGTGCAAATAGTTGTCACCCACGACGAGTTGCAAAATGGGTTACACGTGGTCCGATCCTAA 543 0.4622 MADDADYQPLFDTKFGVILIAMGSASFVVTIYHLIFICCKHASEQARQHEQPATQTLSTEEGSLVSHQIPSYKYEKKRNDDNDDDDCVTCAVCLGDFEEGEELRAMPSCMHSFHVPCIDMWLLSHLNCPVCRADATPSPVVPHCLPEVRSTEGNVDYGVNMVQIVVTHDELQNGLHVVRS* 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g2256 180 Pfam Ring finger domain 89 132 IPR001841 -
Mtr8g2256 180 SUPERFAMILY RING/U-box 69 138 - -
Mtr8g2256 180 ProSiteProfiles Zinc finger RING-type profile. 90 132 IPR001841 -
Mtr8g2256 180 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 2 141 IPR044675 -
Mtr8g2256 180 PANTHER CHROMATIN REGULATOR PHD FAMILY-RELATED 2 141 - -
Mtr8g2256 180 SMART ring_2 90 131 IPR001841 -
Mtr8g2256 180 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 62 139 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g2256 Mtr-Chr8 32754258 32754800 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g2256 17 136 C3H Transcription Factor Family AT5G17600 39.394 1.34e-19 82.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g2256 - - lja:Lj0g3v0111029.1 188.734