Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g2254 ATGATGGAGTCATCGAGTGGAAGAGAGTTTTGTGCAAATGGGACCTCCATGGATACCGCGGAGGTTGAGGCTAAGCTCGATCAAGGAAATATTCAAGATGCTGAAACTGCATTACGTGATGGCTTGTCTCTTACTTCTGAGGAAGCACAAGCTCTACTCGGAAAATTAGAGTATCAAAGAGGTAATGTGGAAGGTGCTCTTCGTGTATTTGATGGGATTGATCTTAAAGCAGCTATACAGCGACTGCAACCTTCTTTTTTGGAAAAGCCACCCGTCAAAAAAGGTCCCTCTCGTGCCGAATCACCTTCTTCAGTAACTCAGCATGCTGCTAGTATGGTGCTTGAAGCCATCTACCTAAAAGCCAAGTCTCTACAAAAACTGGGGAAATTTGATGAAGCTGCCAATGAATGCAAGCAAGTTCTTGATGCTGTTGAGAAGGTATTTTCTCAGGGTATATCTGATACTCAAGTTGACAGTAGATTGCAGGAGATAGTAAGCTGTGCAGTAGAGCTCCTTCCCGAGCTTTGGAAACAGGCTGGTTGCTACGATGAGGCAATAACCGCTTATAGGAACGCTCTTCTAAGTCAATGGAATCTTGATAATGATTGCTGTGCGAGAATTCAGAAAGCATTCGCCGTATTTTTGCTTTACAGTGGTGTGGAGGCGAGTCCGCGAAGTTTTTCCGTTCAGATTGAGGGGTCTTATGTACCTAAGAATAATCTCGAAGAGGCAATTCTTCTTCTTATGATTGTTTTGAGGAAGTTTAGCCTAGGTAAAATAAAATACGATCCTTCAGTTATGGAACACCTAACTTTTGCACTCTCAGCATGTGGCGAAACTTCTATTTTGGCGAAGCAATTTGAAGAGATGCTTCCTGGTGTATATCATCGTATTGACCGTTGGAATTCTTTAGCTCTATGTCTTAGTGGAGCTGGACAAAATAAAAGTGCTTTGAATCTGCTACGGAAGTCTTTGCACAAACATGAACGACCAGATGACTTGCTAGCATTATTATTGGCTGCGAGGATTTGCAGTGAGGATCCTCATCTTGCTGCTGAGGGTGCAGGATATGCTCAGAGGGCAATCGATAAAGCTCAGGGCTTAAACGAGCATTTGGAAGGTGTTGGTCTTCGGATGCTCGGACTCTGTCTTGGAAAGCAAGCTAAGGTTGCTTCCTCCGATTTCGAGAGGTCCATGCTTCAGTCAAAAGCTTTGCAATCATTGGAGGAGGCAGTTAGATTAGAGCAAAACAATTTTGATCTAATTTTTGAACTGGCTATTCAATATGCCGAGCACCGAAATTTGGCGGTTGCTTTACGTTATGCCAAGCAGTTCTTCGACAAAACTGGTGGCTCTAAATTGAAAGGATGGAGATTGCTTTCTCTGGTTTTGTCTGCACAGAAAAGATTTACAGAGGCCGAAGTGGTAACTGATGCGGCTATAGATGAGACCTCGAAATGGGAGCAGGGGCCTTTGTTCAGGATAAAAGCCAAGCTGAAGATCGCTGAATTAAGACCAATGGATGCTATTGAGATTTACCGGTACCTTCTTGCACTAGTTCAAGCCCAGAAGAAATCTGTTGGCACTCAAAGACTTAGTTCACAGGACGAGGAGGATCAAATAAATGAGTTTGATGTTTGGCATGGTCTAGCAAATTTATATGCAAGCCTTTCACATTGGAAGGATGCTGAAATCTGTTTGCAAAAGGCTAGAGAGTTGAAGGAATACTCGGCAGCAACAATGCAAACTGAAGGTATTGTGTTTGAAGGTTGTGGACAAAGCGGTAAAGGTCTTGCAGCTGCTATCAATGCTATCCTAGTTGAACCAAACCATGTTCCAAGCAAGATCTTGATGGGTTCTTTGATGCTGAAAAGTGGTTCAAAAGCATCACCTGTTTCTAGGAGTTTACTTTCCGATGCACTTAGAATAGAACCAACTAATCGCAATGCTTGGTATCATCTCGGATTAACTCACAAGGAAGATGGTCGAATGGGTGATGCTGCTGATTGCTTCCAGGCAGCTTCAATGCTTGAAGAATCTGATCCCATTGAAAGTTTTAGTTGTATGCTTTGA 2073 0.4303 MMESSSGREFCANGTSMDTAEVEAKLDQGNIQDAETALRDGLSLTSEEAQALLGKLEYQRGNVEGALRVFDGIDLKAAIQRLQPSFLEKPPVKKGPSRAESPSSVTQHAASMVLEAIYLKAKSLQKLGKFDEAANECKQVLDAVEKVFSQGISDTQVDSRLQEIVSCAVELLPELWKQAGCYDEAITAYRNALLSQWNLDNDCCARIQKAFAVFLLYSGVEASPRSFSVQIEGSYVPKNNLEEAILLLMIVLRKFSLGKIKYDPSVMEHLTFALSACGETSILAKQFEEMLPGVYHRIDRWNSLALCLSGAGQNKSALNLLRKSLHKHERPDDLLALLLAARICSEDPHLAAEGAGYAQRAIDKAQGLNEHLEGVGLRMLGLCLGKQAKVASSDFERSMLQSKALQSLEEAVRLEQNNFDLIFELAIQYAEHRNLAVALRYAKQFFDKTGGSKLKGWRLLSLVLSAQKRFTEAEVVTDAAIDETSKWEQGPLFRIKAKLKIAELRPMDAIEIYRYLLALVQAQKKSVGTQRLSSQDEEDQINEFDVWHGLANLYASLSHWKDAEICLQKARELKEYSAATMQTEGIVFEGCGQSGKGLAAAINAILVEPNHVPSKILMGSLMLKSGSKASPVSRSLLSDALRIEPTNRNAWYHLGLTHKEDGRMGDAADCFQAASMLEESDPIESFSCML* 691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g2254 690 ProSiteProfiles TPR repeat profile. 648 681 IPR019734 GO:0005515
Mtr8g2254 690 SUPERFAMILY TPR-like 48 195 IPR011990 GO:0005515
Mtr8g2254 690 SUPERFAMILY TPR-like 505 627 IPR011990 GO:0005515
Mtr8g2254 690 Pfam Tetratricopeptide repeat 21 71 - -
Mtr8g2254 690 SUPERFAMILY TPR-like 114 439 IPR011990 GO:0005515
Mtr8g2254 690 SMART tpr_5 544 577 IPR019734 GO:0005515
Mtr8g2254 690 SMART tpr_5 648 681 IPR019734 GO:0005515
Mtr8g2254 690 SMART tpr_5 114 147 IPR019734 GO:0005515
Mtr8g2254 690 SMART tpr_5 298 331 IPR019734 GO:0005515
Mtr8g2254 690 Gene3D Tetratricopeptide repeat domain 395 685 IPR011990 GO:0005515
Mtr8g2254 690 Gene3D Tetratricopeptide repeat domain 20 376 IPR011990 GO:0005515
Mtr8g2254 690 PANTHER CALMODULIN-BINDING PROTEIN 3 689 - -
Mtr8g2254 690 PANTHER PROTEIN NPG1 3 689 IPR043376 -
Mtr8g2254 690 SUPERFAMILY TPR-like 403 678 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g2254 Mtr-Chr8 32742423 32746982 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g2254 8 690 Calmodulin-binding Proteins AT2G43040 69.432 0.0 949
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g2254 K21843 - gmx:100811897 1120.53