Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g2249 ATGGACACTGCTGAATCCGAACCTCAAGTTGTTCTCTTCCTTGACCAACAACCCAACCCTAAACCTTCTACTATGGACACTGAAACTCACCACTACACTGAACCTCATCAAGAGAAGCCTAAACATCCCTCAAGAGCAAAAACCCTTACCCGTCTAAGCTTTTCCAAACCCAAATCTCGAATCCTTGAATACAACCATCCACCTCGCAACAAACTACCTACCTCTGAAGAAGAAGACACTCAATTACCTATATACAAGATCTCTTCCGATGTCGAAGATGACAGCGACTATGAATACCAGGAAGAAGAATCAGAGGATGAGGACGAAGAGGTTTTGCGTGATTCGAAGTCACACAACAAAAAGAAAAAATTTAAAGTAAAGTGGAGACTTGTTTTTGAATGGATATTATTTCTAAACATATTAACATGTTTGGTTTGTTCTGTCACAATAAGAGGAATAACAAACATGCATTTATTAGGGTTAGAGGTTTGGAGATGGTGTTTAATGGCAATGGTAACATTTAGTGGCCGTTTGTTTTCAAGTTGGTTAGTTAGTTTCACCGTTTTCTTTATCGAAAGAAACTTCATGCTAAGAGAAAAAGTTTTATATTTCATCTATGGTTTAAGGAACAGCATTCGTAATTGTTTATGGTTAGGTCTTGTTTTACTCTCATATTGGAGTGTCGTTTTCGATGATGTCCAAAAGAAAAACCATAAATTCCTCAACAAAGTGTTTCAAGCACTTGTTGCTGTTTTAATTGGTGCAACCATTTGGTTAGTCAAAATTGTTTTGGTAAAAATGTTAGCTTCATCATTTCATGTGACAACATATTTTGATAGAATGAAAGAAAGTGTTTTTCATCATTATGTGTTGGATGCATTGTCGGGTCCACCGGTCGAAAATGGCGAGGAAGTATCGAAAGAGCATCCTTTGAAGGGTTCAAAGACGATGCCGCCGGGTGTGGGGAGGTGGAAGAAGATGAAGAGATTTGGTTCAAGGAGGATTGATATGGAGAAGTTGAAGAAACTTAGTATGGAGAGTAGTGGTTCTGTTTGGAGTGTTAAAAGGCTTGTTAATTATGTTAGGTCTTCTGGTTTGTCAACTATTTCTAGGACTATTGATGATTTTGGTAACAGTGAAAGTGAGATTAGTAGTGAATGGGAAGCTAGAACTTGTGCTCAGAAGATTTTCAACAATGTTGCCAAACCTGGTGCCAAGTATATTGAAGAAGTCGATCTCATGAGATTTTTGAAGAGGGTTGAGATACACACCATATTTCCACTCTTTGAAGGTGCCCTTGAAACTGGGAAGATTAGCAGATCTTCCTTTAGAAATTGGGTGATTCGAGCTTATTATGAAAGAAAAGCACTAGCACAATCACTGAATGATACCAAAACAGCAGTGCAACAACTTCACAAATTAGCAAGTTGTGTTGTGTGTGTGATAATAATAATTGTGACCCTTTTGGTGATGGAAGTTGCTACAATGAAGATAATATTGTTCTGTATCACACAAACTGTTTTAATAGGAGTTGCATTCCAAGGCACTTGCAAAACTGTCTTGGAAGCTATCATCTTTGTCTTCATCATGCACCCTTTTGACATTGGAGACCGTTGTGTCATTGATGGTGTCCAGATGATTGTGGAAGAAATGAATATCTTGACAACAGTGTTTCTTCGATATGACAATGAGAAAATATATTACCCTAATGCAGTCTTGCTCACTAGGCCAATAAGCAATTTTTATAGGAGTCCAGAAATGAGTGATGCAATTGATTTCACCATTGATGTTACAACTCCTATAGAGACTATCATTGCACTCAAGAAATCAATACAAATGTACATTGAGAGTAAACCAAAGTATTGGAATCCAAAGCATAGTGTGATGGCAAAACAAATAGATCAAGTGGACAAGTTAAAGCTGTGTTTATGTGTAACACACACCATTAACCATCAGAACTATGGTGAAAGAAGCACTAGGATATCAGAACTTCTCTTGGAGTTGAAAAAGATGTTTGAGATTCATGGTATCAAGTACCATCTTCTCCCTCAAGAAATCCATCTCACTCAAATGAATATTGGAAATGGTAGAGTTTTGTTTCAATCATGA 2109 0.3736 MDTAESEPQVVLFLDQQPNPKPSTMDTETHHYTEPHQEKPKHPSRAKTLTRLSFSKPKSRILEYNHPPRNKLPTSEEEDTQLPIYKISSDVEDDSDYEYQEEESEDEDEEVLRDSKSHNKKKKFKVKWRLVFEWILFLNILTCLVCSVTIRGITNMHLLGLEVWRWCLMAMVTFSGRLFSSWLVSFTVFFIERNFMLREKVLYFIYGLRNSIRNCLWLGLVLLSYWSVVFDDVQKKNHKFLNKVFQALVAVLIGATIWLVKIVLVKMLASSFHVTTYFDRMKESVFHHYVLDALSGPPVENGEEVSKEHPLKGSKTMPPGVGRWKKMKRFGSRRIDMEKLKKLSMESSGSVWSVKRLVNYVRSSGLSTISRTIDDFGNSESEISSEWEARTCAQKIFNNVAKPGAKYIEEVDLMRFLKRVEIHTIFPLFEGALETGKISRSSFRNWVIRAYYERKALAQSLNDTKTAVQQLHKLASCVVCVIIIIVTLLVMEVATMKIILFCITQTVLIGVAFQGTCKTVLEAIIFVFIMHPFDIGDRCVIDGVQMIVEEMNILTTVFLRYDNEKIYYPNAVLLTRPISNFYRSPEMSDAIDFTIDVTTPIETIIALKKSIQMYIESKPKYWNPKHSVMAKQIDQVDKLKLCLCVTHTINHQNYGERSTRISELLLELKKMFEIHGIKYHLLPQEIHLTQMNIGNGRVLFQS* 703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g2249 702 MobiDBLite consensus disorder prediction 27 45 - -
Mtr8g2249 702 PIRSF Memb_At2g17000 5 700 IPR016688 -
Mtr8g2249 702 SUPERFAMILY Sm-like ribonucleoproteins 523 581 IPR010920 -
Mtr8g2249 702 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 5 700 IPR016688 -
Mtr8g2249 702 MobiDBLite consensus disorder prediction 298 318 - -
Mtr8g2249 702 Pfam Mechanosensitive ion channel 473 678 IPR006685 GO:0016020|GO:0055085
Mtr8g2249 702 Gene3D - 532 581 IPR023408 -
Mtr8g2249 702 MobiDBLite consensus disorder prediction 10 26 - -
Mtr8g2249 702 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 700 - -
Mtr8g2249 702 MobiDBLite consensus disorder prediction 94 110 - -
Mtr8g2249 702 MobiDBLite consensus disorder prediction 1 114 - -
Mtr8g2249 702 MobiDBLite consensus disorder prediction 62 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g2249 Mtr-Chr8 32695731 32701957 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g2249 1 692 Mechanosensitive Ion Channel Family AT5G12080 42.356 0.0 546
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g2249 K22048 - gmx:100813521 1064.29