Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g2235 ATGGATCCTGGTCGCTATGCACTGCATCAAGGCTGGGATAATAACAGCGCTCTTGAGGGTTATGGTGCGGTCCATGAGCCAAATTTTCGAGTCGGTGGCGCTTATGATGAAAGACGGTTTGTAGATGAAAGATATCCAAGGGATGCTGTATACCAGAGAAATAATTTCCATCGCGATGCTCTGAACAGGGAGGCCTATTTGCCACCAGGACCTGCTGTTGGCCAATGGAGTCAATCCAAACGGAGGGGTTATGATGAAGATTATCAACTTGAAAGGGAATCTAGACGTTTACAGAGACCTTATCATGAACCATACAACCAAATGGATGGTTTTAGGGATCGGGAGATTGACATGTACCCGGAGTATGATAAGTTTCGAGATGGTTATACCAACATTGAAAACTATGGTGATCGAGGCTATGACAAACCTGCCAGGTTTGCAGGGCATGACCGTGATGATTATGCATATGATGATTATGGCCACAAGTCCCGTGTTTCCCATCATCGGAGGGAGGATAGCCACGAGAGGGATTACGATCATGGTCGGCATAGTTATGATTCTGATTATGAAAGAGATGGCAGAAGAGATAGTAATTCGAGGCGACGTGAATCACATGATCGAGAACGAGACAAGAGATGTTTTAGTCGGGAAAAAGATCCAAGTCCACATAGGAAACATGAGCGTTCGCGATCGCGTTCACGATCCCATTCTCGATCTCGGTCTCACTCCCGTTCCCATTCTCACTCTCGTTCCCGTTCGCAATCTCGTGGATATGACGATCATCCAAAATCTAGGTCTCCTCGAGGTCGAAGCCGTAGTAGAAGTTATCGTGAAGACAACTATGCTGACAATCGATATGATAGAAGTGAAAGACGCAGGGACCATGATGATAAACGTCAGAGGGAGCATTATTCCGTGGCTCCATCTGCAACTGTTGTTGTGAAAGGTCTTTCACAGAAGACGACTGAAGAAGATCTATACCAAATCCTTGCGGAATGGGGTCCCCTTCGACATGTTCGTGTTATAAAAGAGAGAAGTTCTGGCATCTCTCGTGGATTTGCATTTATTGATTTTCCTTCCGTGGGAGCTGCACAAGGAATGATGGACAAACTCGGAGGTGATGGTCTTGTTGTTGATGGCAGAAAACTTTTCTTTGAATATAGTAGTAAGCCAACTGGAGGTGCAGGTTCAGATGGAGCTATGAAACCAGGTCACGGTCATAAGAGCATTACAATACCATCTGATTGGATGTGCATTATTTGTAGCTACATTAATTTTGCACGGCGGACTTCCTGCTACCAGTGTAATGAACCACGCACTGATGATGCTCCTGCAGCAGATATTTCATTATCAAATTCAACATCTTTAGGAAAGAAAGGTTTAGAGGCGGGTCCAACTCATGTATTGGTTGTCCGTGGATTGGATGAAAATGCCGATGAAGAAATGCTCCGCTATGAGTTTTCCAAGCATGCTCCAATCAAGGATCTACGTCTTGTGAGAGACAAGTTCACTCACGTCTCAAGAGGATTTGCATTTGTACATTTTTATTCGGTAGAGGATGCTACCAAAGCTCTTGACTTAACAAATGGAACGGCCCTTGAGAAGAATGGGCAGATTCTAAGAGTAGCATATGCAAAAAGCATACTGGGGCCTGGATCAGGGGCGTCAGGAACTTCACAATCAAGCAGTCTTGCAGCTGCAGCTATTGAGGCTGCAACATTTTCCCAACAGTATGATTCTGTCGGATGGGCTCCCAAAGAATACAATCCAGATGACAAACAATCTAATGGTCCTGAGCAGCCTGGTACTGATGTTGGTGCACCACAATCAGGCTTTGTTTGGGACGAAGCATCTGGCTATTACTATGATGCTACTTCTGGGTTTTATTATGATGGGAATACTGGTCTTTACTATGATGGTAATAATGGGATTTGGTATTCATATGACCACCATACTCAGCAGTACATCCCATGCACCGATCAAAATCAGAATAAAACATCTAATAACGAGTCTGAACCTTCTAAGGCATCTGATGGTTCTAGCACTAAAAAAGTGGTGATTTCTGCACCAGCTACTATTGTTACTTCAAACGAGAAGCCAGCTTCACTAGCAGATGCCGTCCAGGCTGCTGCAGCTGCTGCTTTAGCTGCAGAGAAGAAAGAGAAAGAAAGATCAAAGGAGATAAAGCTTGCTTCAAAAAGCAGTATTCTAGCAAACAAGAAAAAAATGAACAATGTGCTGTCAATGTGGAAGCAGAGGAGTCATGAGGGACAAGGTACTCATGTGGCACTGGAGGACAATCAGTTATCTGGTTCTGCTGACGATAGGTCATATTCTTCTGCACATTCTGCAAAGAACAAGTTAAAAACTGAGACAGTAGCAAGGGAAATTAATGCGTCTAAACCGGGAGGTCACACAACTGCACAGGTTGTCGCTACTGACTCCCAGGCACAGCCACGACCCTTCAGTAATAGCCTTGGGGGCACTCTGATGGGGGTTATTAGGGGATCAGGAAGAGGTGTTGTTAAATCAGATACTTCTTATTCTGGTTCTACGTCTGCCACACCATCTATGTCCGCTTCATCTTCTGCAAATGTTGATACACAAACATTTTCTACTCCCTTTAAAACAGATGTCTCTTCCCTGGGTTCATATACACCATCTGCGTCTGTTGGAAGTGGACGAAGAAGGTTTTCAGAAATGCCTATTTCTGCTTCAACTCATAAGGAACAGCCCCAAACAACCTATAGGGATCGGGCAGCTGAGAGAAGAAATTTGTATGGCTCGTCATCTTCAGTTGGCAATGATTTGGCTGACCTCGAAATTGGGGATTCAACTCGCGATTTTGCATCAAGGAGGAGTGATACAATGCCATTCCCTCCCGGGGTTGGTGGAGGACACGCGGTTGGTGATGTCAACCTCGATACTTTTGAGGTTATTACAGCAGACAAAGCGATTGATGAAAAGAATGTTGGTAATCGGATGCTTCGCAACATGGGCTGGCAGGAAGGCTTGGGGCTAGGAAAGGATGGAAGTGGAATGATAGAGCCTGTCCAGACACAAGCCATGGAAAATAGAGCAGGACTTGGAAGTCAGCAGAAAAAGTTGGACCCTAGCCTTGAGGTGCAGGCAGGCGATAGCTACAAGATGCTTATTCATAAAAAAGCACTTGCCAGGTTTCGGGAAATGTAG 3192 0.4496 MDPGRYALHQGWDNNSALEGYGAVHEPNFRVGGAYDERRFVDERYPRDAVYQRNNFHRDALNREAYLPPGPAVGQWSQSKRRGYDEDYQLERESRRLQRPYHEPYNQMDGFRDREIDMYPEYDKFRDGYTNIENYGDRGYDKPARFAGHDRDDYAYDDYGHKSRVSHHRREDSHERDYDHGRHSYDSDYERDGRRDSNSRRRESHDRERDKRCFSREKDPSPHRKHERSRSRSRSHSRSRSHSRSHSHSRSRSQSRGYDDHPKSRSPRGRSRSRSYREDNYADNRYDRSERRRDHDDKRQREHYSVAPSATVVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERSSGISRGFAFIDFPSVGAAQGMMDKLGGDGLVVDGRKLFFEYSSKPTGGAGSDGAMKPGHGHKSITIPSDWMCIICSYINFARRTSCYQCNEPRTDDAPAADISLSNSTSLGKKGLEAGPTHVLVVRGLDENADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKALDLTNGTALEKNGQILRVAYAKSILGPGSGASGTSQSSSLAAAAIEAATFSQQYDSVGWAPKEYNPDDKQSNGPEQPGTDVGAPQSGFVWDEASGYYYDATSGFYYDGNTGLYYDGNNGIWYSYDHHTQQYIPCTDQNQNKTSNNESEPSKASDGSSTKKVVISAPATIVTSNEKPASLADAVQAAAAAALAAEKKEKERSKEIKLASKSSILANKKKMNNVLSMWKQRSHEGQGTHVALEDNQLSGSADDRSYSSAHSAKNKLKTETVAREINASKPGGHTTAQVVATDSQAQPRPFSNSLGGTLMGVIRGSGRGVVKSDTSYSGSTSATPSMSASSSANVDTQTFSTPFKTDVSSLGSYTPSASVGSGRRRFSEMPISASTHKEQPQTTYRDRAAERRNLYGSSSSVGNDLADLEIGDSTRDFASRRSDTMPFPPGVGGGHAVGDVNLDTFEVITADKAIDEKNVGNRMLRNMGWQEGLGLGKDGSGMIEPVQTQAMENRAGLGSQQKKLDPSLEVQAGDSYKMLIHKKALARFREM* 1064
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g2235 1063 MobiDBLite consensus disorder prediction 80 108 - -
Mtr8g2235 1063 CDD OCRE_SUA_like 606 658 IPR035623 -
Mtr8g2235 1063 Pfam OCRE domain 609 657 IPR041591 -
Mtr8g2235 1063 Gene3D - 274 410 IPR012677 -
Mtr8g2235 1063 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 469 534 IPR000504 GO:0003723
Mtr8g2235 1063 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 312 373 IPR000504 GO:0003723
Mtr8g2235 1063 SUPERFAMILY Ran binding protein zinc finger-like 408 442 IPR036443 -
Mtr8g2235 1063 SMART G-patch_5 986 1032 IPR000467 GO:0003676
Mtr8g2235 1063 Pfam G-patch domain 989 1030 IPR000467 GO:0003676
Mtr8g2235 1063 MobiDBLite consensus disorder prediction 163 226 - -
Mtr8g2235 1063 MobiDBLite consensus disorder prediction 844 866 - -
Mtr8g2235 1063 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 467 547 IPR000504 GO:0003723
Mtr8g2235 1063 ProSitePatterns Zinc finger RanBP2-type signature. 416 435 IPR001876 -
Mtr8g2235 1063 MobiDBLite consensus disorder prediction 62 108 - -
Mtr8g2235 1063 MobiDBLite consensus disorder prediction 583 609 - -
Mtr8g2235 1063 Gene3D - 411 442 - -
Mtr8g2235 1063 MobiDBLite consensus disorder prediction 658 683 - -
Mtr8g2235 1063 MobiDBLite consensus disorder prediction 252 304 - -
Mtr8g2235 1063 Gene3D - 448 572 IPR012677 -
Mtr8g2235 1063 PANTHER FI21118P1 38 210 - -
Mtr8g2235 1063 PANTHER FI21118P1 219 1063 - -
Mtr8g2235 1063 MobiDBLite consensus disorder prediction 227 251 - -
Mtr8g2235 1063 CDD RRM1_RRM2_RBM5_like 465 545 - -
Mtr8g2235 1063 MobiDBLite consensus disorder prediction 163 307 - -
Mtr8g2235 1063 PANTHER RNA-BINDING PROTEIN 219 1063 - -
Mtr8g2235 1063 PANTHER RNA-BINDING PROTEIN 38 210 - -
Mtr8g2235 1063 SMART rrm1_1 468 543 IPR000504 GO:0003723
Mtr8g2235 1063 SMART rrm1_1 311 386 IPR000504 GO:0003723
Mtr8g2235 1063 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 310 390 IPR000504 GO:0003723
Mtr8g2235 1063 CDD RRM1_RRM2_RBM5_like 308 388 - -
Mtr8g2235 1063 ProSiteProfiles Zinc finger RanBP2 type profile. 412 441 IPR001876 -
Mtr8g2235 1063 SUPERFAMILY RNA-binding domain, RBD 227 388 IPR035979 GO:0003676
Mtr8g2235 1063 ProSiteProfiles G-patch domain profile. 988 1034 IPR000467 GO:0003676
Mtr8g2235 1063 SMART zf_4 414 438 IPR001876 -
Mtr8g2235 1063 SUPERFAMILY RNA-binding domain, RBD 465 552 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g2235 Mtr-Chr8 32549022 32557178 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g2235 309 531 Eukaryotic Initiation Factors Gene Family AT2G36660 25.100 2.30e-09 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g2235 K13094 - gmx:100787998 1699.87