LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mtr8g2232	ATGGATGAGGTGGTTAGACCTGTTGGTAGTAGTTGTAGTAGTGAAGTAGAGCAGTCTCAGTCTAGAGATACTGTTGTCGAAACGGCGTCTTCCTCTGATTCAGGATGGCGTCCTAGGGAGCTTGCTTTTGCTCCATTTGTGCCGCGGGGCGATGAACAACGAGTTAATGCTGCTGGAAAGTCCTTAAAGTTGCGTGCTTTTGTGAGAAAACCTTTGGTGGCAAGATTGACCAAGGGAATAGTTGAAACATACCAAATATGCAATCCAAAGTTTAAATATTCTGATGATCTAAATCCCAAAAGATTTTTGACCAGCCCATCTACTGGAGTGCTTAATGATGGCTTTGATAATGCAAACTCGGATCTTATTCTGACAGTGAATTTGGTCTTGATCCATTTAGAGAAAAGTAGAAGATATATTGTCAAAGATCTCCTTGGCCATGGGACATTTGGACAAGTGGCCAAATGCTGGAATTCAGATACCAACAGTTTTGTTGCTGTGAAGATCATTAAAAATCAACCTGCATACTATCAACAGGCACTGGTTGAAGTAACTATTTTAACAACGTTAAATAAGAAGTACGATCCTGAGGATAAGCATCACATTGTTCGTATATATGATTATTTTGTATATCAACGGCATTTGTGCATATGCTTTGAACTTCTGGACACAAACCTGTATGAGCTTATCAAAATGAATCATTTTAGGGGATTGTCTCTTGGTATTGTTCAGTTGTTCTCTAAGCAGATTTTATGTGGACTGGCTCTATTAAAAGATGCTGGCATTATTCATTGTGATCTGAAGCCAGAAAACATTCTTTTATGTACGAGTTCCGTGAAGTCAGCAGAAATTAAGATTATTGACTTTGGATCGGCATGCATGGAAAACCGTACTGTTTATTCATATATTCAGAGTCGATACTATAGATCTCCTGAGGTTCTTCTTGGATATCAATACACAACAGCTATTGACATGTGGTCGTTTGGGTGCATAGTGGCAGAATTGTTTCTTGGATTACCATTATTCCCCGGGGCTTCAGAATTTGATCTTTTGAAAAGGATGATTGAAATAATTGGAGGACAGCCACCTGATTATGTACTGCGGGACGCCAAAAACACTAGTAAATTCTTTAAGTGTATAGGGAATCTCCAAAACATAGAAATCAGCGAGGGTTCCAAAAATGGACGTGTTTATCAAGCATTGACAGCAGAAGAATATGAAGCTAGAGATTTGAAGAAGCCGTCAATTGGAAAAGAGTATTTTAAACATATGAATCTTGAAGCAATTGTGACAAACTACCCCTACAGGAAAAACCTACCAAAGGAAGATATTGCCAAAGAAAGTCAAATACGATTGGCTCTTATTGACTTTTTGAGAGGGCTTGTTGAATTTGACCCTGCAAAACGCTGGTCACCCTTCCAGGCTTCAAAACACCCTTTTATAACCGGGGAACCTTTTACTCACCCTTACAGACCTTCCCCTGAGACCCCTCACATTCCGGTAGTTCAAAACGTCAAGGTTGATAATCATCCAGGTGGAGGACACTGGTTTGCTGCTGGCCTATCACCAAATGTTGCAGGCAAAAACAGAGCTTCCCTCTATAGCAGTCCTCATTTTCAGCTGGCGCAACATCCACCTGCTAATAGCTATGGCAGTGTAGGAAGCCATGGGAGCTATAATGATGGTATTGGGCTTGGAAGCAGCTATGGAAGTTATGGAGAGAGCAGTAACATGTTTGCTTACTATTCACCTATCGCTCCATCTGGGATGAACATGCACAGTCAGGGTGGTATGTCAATGCTTGGAAATAGTCCTGATGCTCGGAGAAGATTTAAGTACCAACCTGGGAATGGGCTGGGTGTAAGTCCATCTGGTGGAAATTTCGCTCCCTTGCCTCTTGGTGCCAGCCCATCTCAATTTACTCCACCAAGTTCATATAGTCAGATTTCAGTTGGTTCGCCAGGACATTTTGGGCCTACATCTCCTGCAAGAGGAGCTTCTCATGGATCACCTTTGGGCAAGACTGCTGCAGTCAGCCAGTTTAATAGAATGAAAAATTGGGGACATTCTGGAAGTCCTCAAACTCAAGAAACAGCATTTTCTTCACATTGGCATGGTCAATATCCTGATAGCTTTAGCCAAGCTGAGGGGACATCACATGCTCCTGGAAGTTCACCATCATATTCACAATCAAATATTAATCCTGGAAATTGGAAGCAGCGTGGAAGTGGAGGGGTATCTGCTAATCAGAACATTCCATCCATGGTTATGCCTGGTTCTAATATGAACTCACAATCGATGGAATTGGTCCGTGACAATGTGGAGACAGGTTTTTCATTGCCTGATCCTGGAGATTGGGATCCTAATTATAGTGATGAACTACTTCTGCAAGAAGGTGGTTCAAATGAAAGCTCTTTGACAACTGAATTTGGCAGAAGTGTGAATCTTGGTTCCACTGAACCGTGGTCTGGATTTGGAAGACTAAATGGACCCGGTCAAACATTATCTAATGTAGAGATGGGTAGCCCCCCGACACATGATCTCCCAGCAGCATACATACCCTCTATGTCAAAGCCTTTTCATCTCACGCCTCATATTTCACAAAATTCTCCAAGCCGTTTTGGACACCAATCTGTTCAAAGATTTACACATGGCAGACCTCCTCAGGGTAGTGACTGGAATCAAATTAAGATTCAGGCTCCTTCTAATTTCAGCAATGTGGGCCCACGTTCTCCCAGGAATGCCTCATTCACTGGCAATATGACATGGGGGAGAAGAATGAATCCTCCCATGGCAAGTATTCCTCCTATTTCAAACATGCCACCCACATCTCGTTCAAGAAAAGACTATGCAAGGATAGATTAG	2865	0.4216	MDEVVRPVGSSCSSEVEQSQSRDTVVETASSSDSGWRPRELAFAPFVPRGDEQRVNAAGKSLKLRAFVRKPLVARLTKGIVETYQICNPKFKYSDDLNPKRFLTSPSTGVLNDGFDNANSDLILTVNLVLIHLEKSRRYIVKDLLGHGTFGQVAKCWNSDTNSFVAVKIIKNQPAYYQQALVEVTILTTLNKKYDPEDKHHIVRIYDYFVYQRHLCICFELLDTNLYELIKMNHFRGLSLGIVQLFSKQILCGLALLKDAGIIHCDLKPENILLCTSSVKSAEIKIIDFGSACMENRTVYSYIQSRYYRSPEVLLGYQYTTAIDMWSFGCIVAELFLGLPLFPGASEFDLLKRMIEIIGGQPPDYVLRDAKNTSKFFKCIGNLQNIEISEGSKNGRVYQALTAEEYEARDLKKPSIGKEYFKHMNLEAIVTNYPYRKNLPKEDIAKESQIRLALIDFLRGLVEFDPAKRWSPFQASKHPFITGEPFTHPYRPSPETPHIPVVQNVKVDNHPGGGHWFAAGLSPNVAGKNRASLYSSPHFQLAQHPPANSYGSVGSHGSYNDGIGLGSSYGSYGESSNMFAYYSPIAPSGMNMHSQGGMSMLGNSPDARRRFKYQPGNGLGVSPSGGNFAPLPLGASPSQFTPPSSYSQISVGSPGHFGPTSPARGASHGSPLGKTAAVSQFNRMKNWGHSGSPQTQETAFSSHWHGQYPDSFSQAEGTSHAPGSSPSYSQSNINPGNWKQRGSGGVSANQNIPSMVMPGSNMNSQSMELVRDNVETGFSLPDPGDWDPNYSDELLLQEGGSNESSLTTEFGRSVNLGSTEPWSGFGRLNGPGQTLSNVEMGSPPTHDLPAAYIPSMSKPFHLTPHISQNSPSRFGHQSVQRFTHGRPPQGSDWNQIKIQAPSNFSNVGPRSPRNASFTGNMTWGRRMNPPMASIPPISNMPPTSRSRKDYARID*	955

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mtr8g2232	954	CDD	PKc_YAK1	139	481	-	-
	Mtr8g2232	954	MobiDBLite	consensus disorder prediction	902	954	-	-
	Mtr8g2232	954	Pfam	Protein kinase domain	140	481	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Mtr8g2232	954	Gene3D	Phosphorylase Kinase; domain 1	103	219	-	-
	Mtr8g2232	954	MobiDBLite	consensus disorder prediction	11	35	-	-
	Mtr8g2232	954	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	262	274	IPR008271	GO:0004672\|GO:0006468
	Mtr8g2232	954	PANTHER	DUAL SPECIFICITY PROTEIN KINASE	34	897	-	-
	Mtr8g2232	954	ProSitePatterns	Protein kinases ATP-binding region signature.	145	168	IPR017441	GO:0005524
	Mtr8g2232	954	PANTHER	BNAC04G29850D PROTEIN	34	897	-	-
	Mtr8g2232	954	SUPERFAMILY	Protein kinase-like (PK-like)	135	504	IPR011009	-
	Mtr8g2232	954	MobiDBLite	consensus disorder prediction	673	761	-	-
	Mtr8g2232	954	MobiDBLite	consensus disorder prediction	1	36	-	-
	Mtr8g2232	954	Gene3D	Transferase(Phosphotransferase) domain 1	220	482	-	-
	Mtr8g2232	954	MobiDBLite	consensus disorder prediction	630	761	-	-
	Mtr8g2232	954	MobiDBLite	consensus disorder prediction	638	655	-	-
	Mtr8g2232	954	MobiDBLite	consensus disorder prediction	902	923	-	-
	Mtr8g2232	954	ProSiteProfiles	Protein kinase domain profile.	139	481	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Mtr8g2232	954	SMART	serkin_6	139	481	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mtr8g2232	Mtr-Chr8	32516778	32529679	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mtr8g2232	135	384	MAP Kinase Gene Family	AT3G18040	31.321	9.27e-31	125

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_DYRK-YAK	Mtr8g2232		Pkinase	1.1e-50	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mtr8g2232	K18670		-	gmx:100792777	1628.99