Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g2224 ATGAGTTCGTTCTCCATTACGAGGAAAAAGACGCCATTTCAGAAGCATAGAGAAGAGGAGGAGGCAAAAAAGAAGAGAGCGGAAGATGAGACTGCTCGCCTGTATGCTGAATTTGTAGAGTCATTTCAAGGGGATAATGCTCCCGGGTCAAAGACTTTTGTTCGAGGAGGAACAATTAATCCCAATGATAAATTGAAAGACGATTCTGAGGGTGAAAAGTCCAAAGAGGGGGTATCTGGTCCAAAGAAGGGAAGTAGATATGTACCATCTTTTATACCGCCTCCATTGGCAACCAAGGGGAAAGAATCTGAAAAGAAAAAAGAGGAAGAAAAGCCAAAGGAAAAAGAGAAAGGAAAGTCAAGGAACATTGATCATTTTATGGAGGAGCTAAAGCAAGAGCAAGAGATGAGGGAGAGACGAAATCAAGACCGTGAACAATGGCGTGATGGGCGTATTGGAGAGCATTCTATTTCCAGTCGTTTTGATGAACTACCTGACGATTTTGATCCAAGTGGAAAGCTTCCAGGATCATTTGATGACGGTGATCCACAAACTACAAATCTTTACGTTGGAAATCTCTCACCCCAGGTTGATGAAAACTTTCTTCTGCGCACTTTTGGAAGATTTGGACCTATTGCTAGTGTGAAGATAATGTGGCCTCGAACAGAGGAGGAGCGAAGGCGGCAAAGAAACTGTGGTTTTGTTGCATTCATGAACAGAGCTGATGGACAGGCTGCAAAAGACGAAATGCAAGGAGTCGTGGTTTATGAGTACGAATTGAAAATTGGATGGGGAAAGTCAGTTGCCCTCCCATCACAAGCATTACCTGCACCTCCACCAGGGCATATGGCCATCAGGAGTAAGGAGGGTAACACTGTTATCTTGTCTGGCCCATCAGGTCCACCAGTAACATCAGTGCCTAGTCAGAACTCTGAACTGGTTCTTACTCCTAATGTTCCTGATATAATGGTTACACCTCCTGAGGATGAACATCTAAAGCATGTAATTGATACAATGGCTCTGTATGTATTGGACGGAGGATGTGCTTTTGAACAGGCTATTATGGAGAGGGGTCGTGGCAACCCTCTTTTCAATTTCTTGTTTGTTCTTGGCTCGAAGGAGCATACCTATTATGTTTGGAGGCTCTATTCATTTGCTCAGGGTGATACTCTTCAAAGATGGCGAACTGAACCTTTTATCATGATAACGGGTAGTGGAAGATGGATTCCTCCTGCATTACCGATAGCGAAAAGTCCAGAACATGACAAAGAATCTGGCTCCACACATGCTGCTGGAAGGAGCAGGCGTGCAGAACCTGAAAGAACCCTGACTGATGCACAGAGGGATGAGTTTGAGGATATGCTGCGTGCTTTAACATTAGAGAGGAGTCAGATAAAGGGGGTTATGGGGTTTTCTTTGGATAACGCCGATGCAGCTGGCGAGATAGTTGAAGTGTTGACGGAATCCTTGACACTTAAAGAAACCCCTATTCCTACTAAAATTGCAAGGCTTATGCTTGTCTCTGATATTCTTCATAATAGTAGTGCTCCTGTAAGAAATGCATCGGCTTATCGCACCAAGTTTGAAGCAACATTACCTGATGTAATGGAGAGTTTTAATGACTTGTATCGTAGCGTAATGGGGCGTATTACTGCTGAAGCCCTTAAGGTACTGAAAACCAGTAGACTGCCTTGCTATAATTTCTTATTATTCTTATTCTGTTTACAATCTTTATCTGAAATGTTGCAGGAGCGAGTACTGAAAGTTTTGCAAGTATGGGCCGATTGGTTTCTCTTTTCAGATGCTTATGTTAATGGCTTAAGAGCCACTTTCCTTAGACCTGGGAACTCTGGTGTAATACCATTCCACTCCATATGTGGTGACGCACCTGATATTGAGCAGAAGATCACTTCTGATGATGCTATTGTTGGTGGCAAGACCGACCAAGATGCTGCATTGGCAATGGGTCGAGGAGCTGCAACGAAAGAGCTAATGAGTCTTCCTCTTGCTGAGCTGGAAAGGCGGTGCCGACACAATGGATTGTCACTTGTTGGTGGTAGAGAAATGATGGTTGCACGGTTGCTAAGTCTTGAAGAGGCAGAAAAGCAAAGAGGTTATGAACTAGATGATGGATTGAAATATCCCGGCAACCAAACAAGTTCAGGGAAAAATTCAAGTGGTCAGCGAGAAACAAGTGCAGATCCTGAACCAATGGGATTGTCTGGATTGAATCATTATGGGGATGAAGATTTGCAGTTGCAAGGCAAAGGTTATGCACCTTTAGCGCCAACCCTTCCTATTCCACAGCCTGAACTTAAAGCCTTCGCAAAAAAAGAGAAGAATGATCTGGTTCTGCCAGCCTCTAAATGGGCTCGGGAGGATGATGAGAGTGATGATGAGCAAGGGAAAGGTGGGAAAAATCTTGGGTTAAGCTACTCATCCTCTGGTAGTGAGAATGTGGGTGATGACCTTATTAAAGCTGATGAATCAGAGGCTGCTGCTGATTCAAGTTTTCCAGCTCATGCTGACAGTGGAATGAATGAAGAGCAGAGACAAAAGTTGAGACGCTTGGAGGTTGCTTTAATTGAATATCGCGAGTCTCTTGAAGAAAGGGGGATTAAAAATTTGGAAGAAATTGAGAAGAAAGTTCTGATGCACCGGAAACGGCTGCAAGTGGAGTACGGGTTATCAGATTCTAATGAAGATGGTCAAGGCAGTAGGAAAACATCTTCAGAGAGGAGGGATAGGCATGATGTCTCAAGGAAACGGCACCGCAGCCATAGTCCAAGTCGTAGTCCACAACAGAAACCGTCAAGCAAAGACAGAGATAGAGAACGAGACAGAAAAAGAGATAAAAGTTATGATTTTGACAGTGATAGAGGAAGAGACAGGCTCAGGGAGAAGAGTGGAAGCAGGGAGAGGGATGATCATGATAGGGATAGAGGCAGGGACAGAGACAGAGACAGAAGAAGACGCGCCAAATAG 2985 0.4415 MSSFSITRKKTPFQKHREEEEAKKKRAEDETARLYAEFVESFQGDNAPGSKTFVRGGTINPNDKLKDDSEGEKSKEGVSGPKKGSRYVPSFIPPPLATKGKESEKKKEEEKPKEKEKGKSRNIDHFMEELKQEQEMRERRNQDREQWRDGRIGEHSISSRFDELPDDFDPSGKLPGSFDDGDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWGKSVALPSQALPAPPPGHMAIRSKEGNTVILSGPSGPPVTSVPSQNSELVLTPNVPDIMVTPPEDEHLKHVIDTMALYVLDGGCAFEQAIMERGRGNPLFNFLFVLGSKEHTYYVWRLYSFAQGDTLQRWRTEPFIMITGSGRWIPPALPIAKSPEHDKESGSTHAAGRSRRAEPERTLTDAQRDEFEDMLRALTLERSQIKGVMGFSLDNADAAGEIVEVLTESLTLKETPIPTKIARLMLVSDILHNSSAPVRNASAYRTKFEATLPDVMESFNDLYRSVMGRITAEALKVLKTSRLPCYNFLLFLFCLQSLSEMLQERVLKVLQVWADWFLFSDAYVNGLRATFLRPGNSGVIPFHSICGDAPDIEQKITSDDAIVGGKTDQDAALAMGRGAATKELMSLPLAELERRCRHNGLSLVGGREMMVARLLSLEEAEKQRGYELDDGLKYPGNQTSSGKNSSGQRETSADPEPMGLSGLNHYGDEDLQLQGKGYAPLAPTLPIPQPELKAFAKKEKNDLVLPASKWAREDDESDDEQGKGGKNLGLSYSSSGSENVGDDLIKADESEAAADSSFPAHADSGMNEEQRQKLRRLEVALIEYRESLEERGIKNLEEIEKKVLMHRKRLQVEYGLSDSNEDGQGSRKTSSERRDRHDVSRKRHRSHSPSRSPQQKPSSKDRDRERDRKRDKSYDFDSDRGRDRLREKSGSRERDDHDRDRGRDRDRDRRRRAK* 995
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g2224 994 MobiDBLite consensus disorder prediction 892 994 - -
Mtr8g2224 994 MobiDBLite consensus disorder prediction 786 803 - -
Mtr8g2224 994 MobiDBLite consensus disorder prediction 714 732 - -
Mtr8g2224 994 MobiDBLite consensus disorder prediction 61 80 - -
Mtr8g2224 994 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 186 267 IPR000504 GO:0003723
Mtr8g2224 994 SMART rrm1_1 187 263 IPR000504 GO:0003723
Mtr8g2224 994 PANTHER RNA PROCESSING PROTEIN LD23810P 5 561 - -
Mtr8g2224 994 PANTHER RNA PROCESSING PROTEIN LD23810P 578 989 - -
Mtr8g2224 994 SMART cwf21_2 846 895 IPR013170 -
Mtr8g2224 994 MobiDBLite consensus disorder prediction 1 164 - -
Mtr8g2224 994 MobiDBLite consensus disorder prediction 786 851 - -
Mtr8g2224 994 MobiDBLite consensus disorder prediction 936 987 - -
Mtr8g2224 994 SMART surpneu2 333 387 IPR000061 GO:0003723|GO:0006396
Mtr8g2224 994 MobiDBLite consensus disorder prediction 415 446 - -
Mtr8g2224 994 PANTHER - 5 561 - -
Mtr8g2224 994 PANTHER - 578 989 - -
Mtr8g2224 994 Coils Coil 17 37 - -
Mtr8g2224 994 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 188 260 IPR000504 GO:0003723
Mtr8g2224 994 Gene3D - 97 269 IPR012677 -
Mtr8g2224 994 SUPERFAMILY RNA-binding domain, RBD 179 274 IPR035979 GO:0003676
Mtr8g2224 994 Gene3D - 443 616 IPR008942 -
Mtr8g2224 994 Pfam Surp module 334 385 IPR000061 GO:0003723|GO:0006396
Mtr8g2224 994 MobiDBLite consensus disorder prediction 706 750 - -
Mtr8g2224 994 MobiDBLite consensus disorder prediction 99 164 - -
Mtr8g2224 994 SUPERFAMILY Surp module (SWAP domain) 308 390 IPR035967 GO:0003723|GO:0006396
Mtr8g2224 994 ProSiteProfiles SAP motif profile. 664 698 IPR003034 -
Mtr8g2224 994 Gene3D - 846 897 - -
Mtr8g2224 994 Coils Coil 847 867 - -
Mtr8g2224 994 ProSiteProfiles SURP motif repeat profile. 335 378 IPR000061 GO:0003723|GO:0006396
Mtr8g2224 994 MobiDBLite consensus disorder prediction 417 446 - -
Mtr8g2224 994 Gene3D Surp module 321 390 IPR035967 GO:0003723|GO:0006396
Mtr8g2224 994 MobiDBLite consensus disorder prediction 11 35 - -
Mtr8g2224 994 CDD RRM_SR140 185 268 IPR035009 -
Mtr8g2224 994 ProSiteProfiles CID domain profile. 443 615 IPR006569 -
Mtr8g2224 994 SMART 558neu5 450 612 IPR006569 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g2224 183 263 Eukaryotic Initiation Factors Gene Family AT1G71770 32.099 2.57e-06 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g2224 K12842 - gmx:100776093 1600.1