Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g2222 ATGGCGATGCTATTGAGAAAACTATGCGATTCAGCATCATCATCGATTAAACGATCCACCAACACCACAAATTCTTCATCATCATCACGATCACACCAACATCATCATCATCATGCTCCGAGTCCTTTGGGTTTATTTGACTCACTCCCTCCTGACATACTCCTCAAAATCACAAGACTATTAGGCCCTAAACATGCTGCCAAACTCTGCCTCGTTTGCAAGTCATGGCGATCTCTCGTCTCCGATAACGAACTCTGGGCTCATTTTCTTCAGACTCACCAGCCTATACACTTTCACTCTATTCTCTTCTCAGAAACTAATTTAACCTCTGGTTACCCTCTTCCAATCTTTGATACTCAGACGACACCACACGTTTCGTTTAAGCATGTTTTTGGTCACCGAGAGCAGCTTCCTCCCGCTATTATCATCGACGGTGGTTCTGGATATTGCAAATTTGGTTGGAGCAAAGAGGACCGTCCATTGGGACGAGTTGCTACCTTTTTGGAATTTGGTAATGTGGAAACGCCAATATATACTAGGCTTCGACATTTTTTTGCAACTGTCTATGGCAGGATGAAGGTGAAACCAAGTTCTCAAGTGGTTGTTGTTTCATTGCCATTATGCCACTATGATGATACCGAATCAGCCAAAGCATCAAGACAGCAGCTTAAAGAAGCAATCTGTGCTGCTCTGTTTGACATGAATGTTCCTGCTGTTTGTGCTCTCAACCAGGCAACTTTAGCTCTGTATGCTGCAAATCAAACTTCTGGAATAGCTGTTAATATAGGCTTTCAAGTTACATCTGTCGTTCCAATTTTAAATGGTAAAGTGATGCGAAAGGTGGGTGTGGAGGTTGTTGGGCTTGGAGCACTAAAACTTACAGGATTTCTTAGAGAGAAAATGCAACAAAACAACCTATATTTTGAATCTTTATACACCGTTCGCACACTGAAAGAGAAGCTATGCTATGTTGCCTATGACTATGAAGCTGAGCTATCGAAGGATACACATGCATCATTTGAAGCCGCTGAAGGGAAGTTTACACTCTCAAAAGAGCGGTTTCAAACAGGAGAGATCTTATTCCAGCCACGTCTTGCTGGGGTGCGAGCAATGAGTTTGCACCATGCCATAGCTCTCTGCATGGACCATTGTCATTCTGCAGAATTAGCAGGTGGCAGTGATTGGTTTAAGACCGTTGTCTTATCAGGAGGGTCTGCATGTTTACCAGGCTTAGCAGAGAGGTTAGAGAAGGAACTTCATTCATTACTTCCACCGTATATGTCAAATGGAATCAGAGTCATCCCTCCTCCACACGGTGCAGATACTGCATGGTTTGGTGCAAAGCTTATCGGCAGTTTGAGTACCTTTCCTGCCCCCTGGTGCATAACAAAGAAGCAATTCCGTCAGAAGTCTAAACTCAACCGGATATGGTGA 1434 0.4365 MAMLLRKLCDSASSSIKRSTNTTNSSSSSRSHQHHHHHAPSPLGLFDSLPPDILLKITRLLGPKHAAKLCLVCKSWRSLVSDNELWAHFLQTHQPIHFHSILFSETNLTSGYPLPIFDTQTTPHVSFKHVFGHREQLPPAIIIDGGSGYCKFGWSKEDRPLGRVATFLEFGNVETPIYTRLRHFFATVYGRMKVKPSSQVVVVSLPLCHYDDTESAKASRQQLKEAICAALFDMNVPAVCALNQATLALYAANQTSGIAVNIGFQVTSVVPILNGKVMRKVGVEVVGLGALKLTGFLREKMQQNNLYFESLYTVRTLKEKLCYVAYDYEAELSKDTHASFEAAEGKFTLSKERFQTGEILFQPRLAGVRAMSLHHAIALCMDHCHSAELAGGSDWFKTVVLSGGSACLPGLAERLEKELHSLLPPYMSNGIRVIPPPHGADTAWFGAKLIGSLSTFPAPWCITKKQFRQKSKLNRIW* 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g2222 477 Pfam F-box-like 47 89 IPR001810 GO:0005515
Mtr8g2222 477 PANTHER ACTIN 99 473 IPR004000 -
Mtr8g2222 477 Gene3D - 186 469 - -
Mtr8g2222 477 CDD NBD_sugar-kinase_HSP70_actin 141 285 - -
Mtr8g2222 477 SMART fbox_2 49 89 IPR001810 GO:0005515
Mtr8g2222 477 Gene3D Actin; Chain A, domain 4 288 370 - -
Mtr8g2222 477 Gene3D - 31 134 - -
Mtr8g2222 477 SUPERFAMILY F-box domain 30 100 IPR036047 GO:0005515
Mtr8g2222 477 SUPERFAMILY Actin-like ATPase domain 139 260 IPR043129 -
Mtr8g2222 477 Gene3D - 245 442 - -
Mtr8g2222 477 SMART actin_3 138 477 IPR004000 -
Mtr8g2222 477 ProSiteProfiles F-box domain profile. 43 89 IPR001810 GO:0005515
Mtr8g2222 477 MobiDBLite consensus disorder prediction 12 29 - -
Mtr8g2222 477 MobiDBLite consensus disorder prediction 10 43 - -
Mtr8g2222 477 Pfam Actin 214 468 IPR004000 -
Mtr8g2222 477 PANTHER ACTIN-RELATED PROTEIN 8 99 473 - -
Mtr8g2222 477 SUPERFAMILY Actin-like ATPase domain 255 468 IPR043129 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g2222 Mtr-Chr8 32421414 32426763 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g2222 187 469 Cytoskeleton Gene Families AT5G09810 32.423 3.30e-38 141
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g2222 K16616 - gmx:100804254 740.725