Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g2183 ATGGCACAGGATACCATTGGAGTTGATTCACAACAAAAACATCTCGGTCGCTTAAAAGATCAAGTTCGATTGGTTAAAAGGAAAGACTGCGAACGCTATGAGGTTTCTCCAATCCAGAACAAACTATCATTTGAGAATGGTTTCTCTATAGTGTTCCATGCATTCCAATTGTTGGTCCAGAAAAATGATGGAATGATATTAATAGGGGTAGGGGGTCCTTCTGGGGCTGGAAAGACTGTGTTTGCCGAAAAGATATTCAACTCCATGCCCGATATTGCAGTCATTTCAATGGACAATTACAATGATTCTAGTCGAATTGTCGATGGAAACTTCGATGATCCACGCTTAACAGACTACGAAACATTGCTCCGAAATGTTCATGATTTAAAGGCAGGAAAGCCAGTCCAAGTTCCCGTGTATGATTACAAATCCAGTTCACGTACAGGATACAGGACGGTTGAAGTTCCGAGCTCTCGAATTGTGATTATAGAGGGCATTTATGCTTTGAGTGAGAGGTTGCGACCTCTACTAGACCTTCGAGTATCTGTAACTGGTGGTGTTCATCTTGACCTTATTAAACGAGTTATACGTGATATACAACGTGCTGGTCAAGAACCTCAAGAAATTATTCATCAAATATCTGAGACGGTATATCCAATGTACAAGGCTTATATTGAGCCAGATCTCCAAACTGCACACATAAAAATAAACAACAAGTTTAATCCATTTTTCGGATTCCAAAGCCCTACTTACATTTTAAAGTCAACCAGGAAAGTAACAGTGGATCAAATCAAAGCTGTTCTCTCCCAAAATTTTGAGGAAACAACTGAGCAAACATATGACATATATCTTCTACCACCTGGTGAAAATCCAGAGAGCTGTCAATCATATTTACGGATGCGAAATAAGGATGGGAAATACAGTCTCATGTTTGAGGAATGGGTGACTGAAGATCCATTTGTCATATCACCGAGAATTACTTTTGCGGTCAGTGTGCGTCTTCTTGGTGGACTGATGGCCCTTGGATACACAATAGCAACTATTCTTAAAAGAAGTAGCCATGTCTTATCTGATGATAGGATTTGCGTTAAACTAGATTGGCTTGAGCAATTAAATCGACATTATGTTCAGGTACAAGGAACAGATCGATTAGTTGTAAAAAACATAGCACAACAATTGGGTTTGGAAGGTTCGTACGTTCCCCGTACCTACATTGAGCAGATTCAACTTGAAAAGCTTGTAATGGCCATGCCAGATGATTTAAGGACAAAACTCAACCTTCATGAGGATTTGTGGTCAAACCCCAAAGCAGCATTTTTAAGAACCTCTAGTGACCGGGTTCCCATGAGACATATACGTATGAGAAGTGATATATCGCAGTCAAGTTCAAATCAAAAAGATGAGAATCAAGCAAAAGTAACTGGTTTCGTTTCGAACAATCGAGGATTTCATAAAAGTAATTCAGATTCTGAAACGAAACAGGAAAATCAGGGTGCCATCACTCACCTCTCAGAACAAATTTCATCGCTACATGATAGAATGGGCGAGTTTACAAATCGTATTGAAGAGCTGAACTCAAAGTTAACCATCAAGAAAAATTGTCCAATTCAACAAAATATGTCCGTGCAAGCCGAGTCCTATGATGGTTCTGCTCCCACGTCTTATTTCATCACTAGTTTAAATAATGGTTCCCTAAATGGACTCTCATCACAATTAGCTAAGGAATCACATTTAAGTGATGAGATATCAGGTATTGCACGGTGCCAGCGCCATATAATGAATCAGTTAGATAATTTGAACAATCTTTTTTGTCGAAATTTGGAAGAGAAGCCTCATCAGACAAGAAACAACTTGAAAAGTGTAGACTCTTCTTCAGATTCGGGTGGTCGTCATATAATGGTGGCGGTGGCTATTGGTTGTGGTTGTTTGGGAATCTTCTTAATGAAGAAGGATCATTTGAAATCTTCAAGGATATCAAACTCTGGTAAAGAAGGCACTGTCACCATGGAGGAAGTTCAAGCGGCTTTAAGACCCAAGGAGTTGACCAAGTCCAAGAACTTGAGAGCGGATGAAAACAGTGAAGGCCTAAGTGTTTCAAGAGGAAATGGTGGTGGTAGAGGTAACCACGGAAGCTCAAAGAGAGGCAACAAGTTAAAGTATAAATGCTTTAAGTGTCACAAGATGGATCACTTCAAAAGGGATTGTCCGGAGGACATTGATAACTCCACGCAAGTTGTCTCTGAGGATTAG 2250 0.3991 MAQDTIGVDSQQKHLGRLKDQVRLVKRKDCERYEVSPIQNKLSFENGFSIVFHAFQLLVQKNDGMILIGVGGPSGAGKTVFAEKIFNSMPDIAVISMDNYNDSSRIVDGNFDDPRLTDYETLLRNVHDLKAGKPVQVPVYDYKSSSRTGYRTVEVPSSRIVIIEGIYALSERLRPLLDLRVSVTGGVHLDLIKRVIRDIQRAGQEPQEIIHQISETVYPMYKAYIEPDLQTAHIKINNKFNPFFGFQSPTYILKSTRKVTVDQIKAVLSQNFEETTEQTYDIYLLPPGENPESCQSYLRMRNKDGKYSLMFEEWVTEDPFVISPRITFAVSVRLLGGLMALGYTIATILKRSSHVLSDDRICVKLDWLEQLNRHYVQVQGTDRLVVKNIAQQLGLEGSYVPRTYIEQIQLEKLVMAMPDDLRTKLNLHEDLWSNPKAAFLRTSSDRVPMRHIRMRSDISQSSSNQKDENQAKVTGFVSNNRGFHKSNSDSETKQENQGAITHLSEQISSLHDRMGEFTNRIEELNSKLTIKKNCPIQQNMSVQAESYDGSAPTSYFITSLNNGSLNGLSSQLAKESHLSDEISGIARCQRHIMNQLDNLNNLFCRNLEEKPHQTRNNLKSVDSSSDSGGRHIMVAVAIGCGCLGIFLMKKDHLKSSRISNSGKEGTVTMEEVQAALRPKELTKSKNLRADENSEGLSVSRGNGGGRGNHGSSKRGNKLKYKCFKCHKMDHFKRDCPEDIDNSTQVVSED* 750
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g2183 749 SUPERFAMILY Retrovirus zinc finger-like domains 704 742 IPR036875 GO:0003676|GO:0008270
Mtr8g2183 749 Pfam CYTH domain 269 404 IPR023577 -
Mtr8g2183 749 ProSiteProfiles CYTH domain profile. 252 410 IPR023577 -
Mtr8g2183 749 SUPERFAMILY CYTH-like phosphatases 260 407 IPR033469 -
Mtr8g2183 749 ProSiteProfiles Zinc finger CCHC-type profile. 721 737 IPR001878 GO:0003676|GO:0008270
Mtr8g2183 749 MobiDBLite consensus disorder prediction 456 499 - -
Mtr8g2183 749 MobiDBLite consensus disorder prediction 678 714 - -
Mtr8g2183 749 Pfam Phosphoribulokinase / Uridine kinase family 67 237 IPR006083 GO:0005524|GO:0016301
Mtr8g2183 749 Gene3D - 65 271 IPR027417 -
Mtr8g2183 749 PANTHER PHOSPHORIBULOKINASE/URIDINE KINASE-LIKE PROTEIN 6 638 - -
Mtr8g2183 749 CDD UMPK_like 67 239 - -
Mtr8g2183 749 Gene3D - 716 747 - -
Mtr8g2183 749 PANTHER URIDINE KINASE 6 638 - -
Mtr8g2183 749 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 61 238 IPR027417 -
Mtr8g2183 749 SMART c2hcfinal6 721 737 IPR001878 GO:0003676|GO:0008270
Mtr8g2183 749 MobiDBLite consensus disorder prediction 456 485 - -
Mtr8g2183 749 PRINTS Uridine kinase signature 65 82 - -
Mtr8g2183 749 PRINTS Uridine kinase signature 132 147 - -
Mtr8g2183 749 PRINTS Uridine kinase signature 188 198 - -
Mtr8g2183 749 PRINTS Uridine kinase signature 224 237 - -
Mtr8g2183 749 Coils Coil 507 527 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g2183 Mtr-Chr8 31995170 32003622 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g2183 66 236 PRT Gene Family AT5G40870 28.333 3.73e-19 89.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g2183 K00876 - gmx:100781286 963.755