Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g2170 ATGGAGGAGAATCCATGGGGGAATTGGTCTTACGATTTGGAAATGGAAGAATGTTTGTGTCACACCAACAACACATTTGATGAAGAGTTCCTCAGAGATATCCTATATCAGACACCACAAGATCAATTTAGTGTCCCTATTGCCACAACGGGCCTATTCAACAACTCATCCACCAATGTGTCACACTCAACTCAACATGCTGAAGAAAAACAAGCCAACTCATTACCGATGCCAACAACTTCTATATTGTCTCTTGACAAATCTGTTACATTGTTACCACCAACTGAACAACACCATGATTCTTTGCCTTTGTCGTCATCAATGGCTAGCCAAGGGTCGAATTCAAAGAAGCCTAGAAGCGCTTCTGAGACACTAGATCACATAATGTCAGAGAGGAATAGGAGACAGCTACTTACAAGGAAGATCATAGAACTTTCGGCCTTTATACCTGGATTAAAGAAGATTGATAAGGTTCATGTGGTAACGGAAGCTATCAATTACGTAAAACAACTTGAAGAACGTGTTAAAGGGCTAGGAGAAGATATCAAAAAGAAAGACACAGGGTCAGTGAGCACCATAACAAGATCCCATATCTTAATTGACAAAGACACTGCAATAGATGAAATGAAAACTGAAGAATGTTACGGGCGAAATGAATCACTTGTAGAGGTTGAAGCTAGGGTTCTAGGGAATGAAGTGTTAATCAAGATTCATTGTGGCATGCAAGAGGGGATTGTGGTCAATATAATGTCCCAGCTTCAGCTTCTTCATCTCTCCGTAACAACTACCAATGTCTTGCCATTTGGAAATACTCTTGACATCGCCATTATTGCTCAGATGGGTAATAAATACAACTTGACAGTGAAGGATCTAGTGAAAAAACTAAGAGAAGTGGCTATGTTGCAAGCATGTGATGATGTGCAAAAATGA 930 0.4 MEENPWGNWSYDLEMEECLCHTNNTFDEEFLRDILYQTPQDQFSVPIATTGLFNNSSTNVSHSTQHAEEKQANSLPMPTTSILSLDKSVTLLPPTEQHHDSLPLSSSMASQGSNSKKPRSASETLDHIMSERNRRQLLTRKIIELSAFIPGLKKIDKVHVVTEAINYVKQLEERVKGLGEDIKKKDTGSVSTITRSHILIDKDTAIDEMKTEECYGRNESLVEVEARVLGNEVLIKIHCGMQEGIVVNIMSQLQLLHLSVTTTNVLPFGNTLDIAIIAQMGNKYNLTVKDLVKKLREVAMLQACDDVQK* 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g2170 309 SMART finulus 128 177 IPR011598 GO:0046983
Mtr8g2170 309 MobiDBLite consensus disorder prediction 94 127 - -
Mtr8g2170 309 Pfam Helix-loop-helix DNA-binding domain 127 172 IPR011598 GO:0046983
Mtr8g2170 309 Gene3D - 113 186 IPR036638 GO:0046983
Mtr8g2170 309 MobiDBLite consensus disorder prediction 56 78 - -
Mtr8g2170 309 PANTHER BHLH TRANSCRIPTION FACTOR 15 306 - -
Mtr8g2170 309 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 122 171 IPR011598 GO:0046983
Mtr8g2170 309 MobiDBLite consensus disorder prediction 94 119 - -
Mtr8g2170 309 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 15 306 - -
Mtr8g2170 309 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 125 182 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g2170 Mtr-Chr8 31829518 31833023 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g2170 119 295 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G22750 43.017 1.31e-37 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mtr8g2170 HLH 2e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g2170 - - mtr:MTR_8g069740 521.931