Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g2131 ATGTTCACTTCAATCCCATTGTTTGTTATCTTATCAAGCCTTTGCCTGTTCATCTCTAAGCCAATGGAAAATAAAGAAAATGAGGAAGAGGTAGTCATGGCTAATATTACTGAACCAACAAGTTACGTTGAAACAACTAAAACCTTGAATCATCATGATGAAGAAACCCTAATGAATTCTCAAAGCAATAGCTTCGAAGAAAAGTTCAAAGAGTGTAGAAAGAATCATGCTTCCAGCATTGGAGGCTACGCTCTTGATGGTTGTGGCGAGTTTTTACCCGCTGGAATTGAAGGGACCATCGAATTTTTCAAATGCGCCGCGTGTAACTGTCACCGAAATTTTCATCGGAGAGAAAATGGTGTTGTTAATGAAGAGAATATTTCCCTTCCTTTTAACAACCCCCGTTTCCCTCAGCCGACTCCCTTTTCAACGGTTTTTCAAACTCCGACCGGTTACCATCATGTGACGGGGACTTCTAGGGGGACAACTACTTCTCTTCCTTCTTCAGTTGTTCATGATGAGGCCCACTTTCCAAGGGGTGATCTTGGAGAAGGTTTTGTTGAGCCAATCTATCATGGTGATACTTATAGTGGTGGAGAAGGGTCGTCAAAATCAAAGAGGTTCAGATCCAAGTTCACTCATTATCAAAAGGAAAGAATGCTTGGTTTTGCTATGAAATCGGGTTGGAAGATTAATAAGCAAGATGAAAATCTTGTTGAACAGTTTTGTAACGAGATTGGTGTAAAGTGTAAAACTTTTAGGGTGTGGATGTATAACAACAAACATACCCATGGAAATAAGCACTAG 807 0.4015 MFTSIPLFVILSSLCLFISKPMENKENEEEVVMANITEPTSYVETTKTLNHHDEETLMNSQSNSFEEKFKECRKNHASSIGGYALDGCGEFLPAGIEGTIEFFKCAACNCHRNFHRRENGVVNEENISLPFNNPRFPQPTPFSTVFQTPTGYHHVTGTSRGTTTSLPSSVVHDEAHFPRGDLGEGFVEPIYHGDTYSGGEGSSKSKRFRSKFTHYQKERMLGFAMKSGWKINKQDENLVEQFCNEIGVKCKTFRVWMYNNKHTHGNKH* 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g2131 268 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 44 266 - -
Mtr8g2131 268 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 1 44 266 - -
Mtr8g2131 268 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 69 118 IPR006456 -
Mtr8g2131 268 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 68 118 IPR006456 -
Mtr8g2131 268 Pfam ZF-HD protein dimerisation region 68 119 IPR006456 -
Mtr8g2131 268 SUPERFAMILY Homeodomain-like 191 264 IPR009057 -
Mtr8g2131 268 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 206 261 IPR006455 -
Mtr8g2131 268 Gene3D - 192 266 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g2131 Mtr-Chr8 31352431 31353347 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g2131 68 267 ZF-HD Transcription Factor Family AT2G02540 39.024 8.45e-46 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Mtr8g2131 ZF-HD_dimer 1.6e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g2131 - - mtr:MTR_8g069080 539.265
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g1340 5 13930578 13931884 Mtr8g2131 8 31352431 31353347 PCT