Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g2104 ATGGCTTCTTCTAATTCTACTAACTTGCTTACGTTTCCTTTGTCTCCAACTGAACTGCTTAACTCACATTTTCCTCAATTCCACACCGACTCTCATTACGATAACTTCTATGTCAATGCCAATGGTTTGATGAGTTTCATGGATTCGGCGAAGATGGGAGATTTTGTTGAGAAGAATCGGAATTCTGGTTTACTATATGATCTTAACTCTACTTCGGTGTTTTTCGGTGATAAACATGATCTTAATAAATCAGTTGTTGAATTTCAAGGTGTTTCTGGTTCTGCTACTGTAACCAAGTTAGGTGAATCTTCTAAAGTTGCTAATCAGAAATCCATTGTTGCGATGGATTCTGATGCTTCCAAAAAAATTACTGTTCATAGCGCTGGCCATCGTACTTCAGCTTACAGAGGAGTCACAAGGCACAGATGGACAGGTAGATTTGAAGCACATCTATGGGATAACAGCTGCAAACGTGAGGGTCAGAAAAGGAAAGGGCGTCAAGTGTACTTGGGTGGGTATGACAAGGAAGAAAAGGCAGCTAGGGCTTATGATTTGGCAGCACTGAAGTACTGGGGACCAACAGCTAACATAAACTTTCCAGTTTCCCATTATGCTAAGGAATTGGAGGAGATGAAAGATGTAGGAAAGCAAGAATTTGTTGCTTCACTGCGAAGGACAAGCACTGGTTTTTCGAGGGGAGCTTCCAAGTACAGGGGTGTTACAAGGCACCATCAACAGGATCGATGGCAAGCAAGAATTGGTCGAGTTGCTGGAAACAAAGATCTATACTTGGGAACATATGAAACTGAGGTGGAAGCAGCAGAGGCATACGACCTTGCAGCCATAAAGTTTAGAGGTGCAAACGCTGTAACCAATTTTGAGATAAGTAGATACAATACTGAGGATATGCTGGATAGTTCTCCTCCAGTTGGTGGAGAAGCAAAACGCTTAAAACCTTCCGAAGAATCGAAGAAGAAAGCTCCTGTGACTAGTACCTCTGAACAACCCGATAGTACAAATATGAATAGCAGCATCGATTTTCTGCCAATTGCTTCTGAACCCTATGATTCTGCAACACAATATTTCGTCAGCAACCATCTCCACCATTTTCATCCTTCTATCAATGCAGAAAGTGGCACAGCAGAGTCTGCGGCAACTACAACCAATGGTGCAGCTGAGTTCTTTCTTTGGCCCCGTCAGTCCCAGTGA 1209 0.4268 MASSNSTNLLTFPLSPTELLNSHFPQFHTDSHYDNFYVNANGLMSFMDSAKMGDFVEKNRNSGLLYDLNSTSVFFGDKHDLNKSVVEFQGVSGSATVTKLGESSKVANQKSIVAMDSDASKKITVHSAGHRTSAYRGVTRHRWTGRFEAHLWDNSCKREGQKRKGRQVYLGGYDKEEKAARAYDLAALKYWGPTANINFPVSHYAKELEEMKDVGKQEFVASLRRTSTGFSRGASKYRGVTRHHQQDRWQARIGRVAGNKDLYLGTYETEVEAAEAYDLAAIKFRGANAVTNFEISRYNTEDMLDSSPPVGGEAKRLKPSEESKKKAPVTSTSEQPDSTNMNSSIDFLPIASEPYDSATQYFVSNHLHHFHPSINAESGTAESAATTTNGAAEFFLWPRQSQ* 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g2104 402 Gene3D AP2/ERF domain 134 202 IPR036955 GO:0003700|GO:0006355
Mtr8g2104 402 Gene3D AP2/ERF domain 235 296 IPR036955 GO:0003700|GO:0006355
Mtr8g2104 402 ProSiteProfiles AP2/ERF domain profile. 236 294 IPR001471 GO:0003700|GO:0006355
Mtr8g2104 402 ProSiteProfiles AP2/ERF domain profile. 134 200 IPR001471 GO:0003700|GO:0006355
Mtr8g2104 402 SMART rav1_2 134 206 IPR001471 GO:0003700|GO:0006355
Mtr8g2104 402 SMART rav1_2 236 300 IPR001471 GO:0003700|GO:0006355
Mtr8g2104 402 SUPERFAMILY DNA-binding domain 235 296 IPR016177 GO:0003677
Mtr8g2104 402 Pfam AP2 domain 134 192 IPR001471 GO:0003700|GO:0006355
Mtr8g2104 402 Pfam AP2 domain 235 286 IPR001471 GO:0003700|GO:0006355
Mtr8g2104 402 CDD AP2 133 202 IPR001471 GO:0003700|GO:0006355
Mtr8g2104 402 PRINTS Ethylene responsive element binding protein signature 135 146 IPR001471 GO:0003700|GO:0006355
Mtr8g2104 402 PRINTS Ethylene responsive element binding protein signature 276 296 IPR001471 GO:0003700|GO:0006355
Mtr8g2104 402 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 102 357 - -
Mtr8g2104 402 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR BBM 102 357 - -
Mtr8g2104 402 SUPERFAMILY DNA-binding domain 133 202 IPR016177 GO:0003677
Mtr8g2104 402 MobiDBLite consensus disorder prediction 301 342 - -
Mtr8g2104 402 CDD AP2 235 296 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g2104 Mtr-Chr8 31046538 31052240 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g2104 5 326 AP2-EREBP Transcription Factor Family AT1G51190 50.643 1.63e-110 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Mtr8g2104 AP2 1.9e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g2104 K09285 - gmx:100777168 402.905
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g1314 5 13591541 13596506 Mtr8g2104 8 31046538 31052240 PCT