Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g2090 ATGATGAAGATGAACGTGTTGAGTATGAAGAACAATAATGTTATCTTCTTTTGGTGGTTTGGAATGATTGTGAAGTTCTGTTTCTTGCTATGTGCTTGTTCTCAGAATACATCATTAAGAGGAGGTTTGAAGAAGATCAATAACCTGGGATCCACAGTTGTAGTCAAGCTGAATACAGAAAACAAACAGCAGTTAGTTGTTGACAATGGCATTGTTTCTGTCACTTTGTCAAAGCCGGAGGGATACCTCATTGGGATATCATATAATGGAATTGACAATATTCTTGAATCTGAATACAAAGAACATGCTAGAGGGTACTTCGACGTTGTTTGGAATGAACTGGGGAAGCATGGAAAAGTCCAAAGAATCCATGGGACAAAATTTTCAGTTATAGTAGCTAATGAGAATATGGTGGAGGTTTCATTTTTAAGATCATGGACATCTTCCATGACTGGCATAGATGTTCCCATAAACATCGATATCAGATACATTTTCAGAAGAGGTGATTCCGGATTTTATTCATACGCAATATTTGATCGCCATGAAGGAATGCCAGCAGTTAAGGTTGATCAAATTAGATTTGTTTTCAGACTCAATAAAGACAGGTTCAACTACATGGCTCTATCGGATACAAGGCAAAGAAGGATGCCAACAATGAGAGATGTTAAAACAGGTCAAGTTTTAGCTTACCCTGAAGCAGTTCTATTAACCAAACCACATAACCCACAATTTACAGGAGAGGTGGATGATAAATATCAATACTCATGTGAGAACATAAATAACACAGTTCATGGATGGATTAGTCTTGATTCTGATCCGACCGTGGGTTTCTGGATGATAACACCAAGTAATGAGTTTCGCAATGGTGGACCCATTAAACAAGACCTTACTTCTCATGCTGGACCTATCACCCTCTCAATGTTTGTGAGTCCCCACTATGCTGGAAAGGATGTAACCATGGAATTTGAAGAAGGGGAGACTTATAAAAAGGTGTTTGGGCCTATATTTGTCTACCTTAACACTGCTTCAAGTGAGAATGATAATGCAACTCTCTGGTCAGATGCTGTACAACAGTTTTCCAAGGAAGTCCAAAGTTGGCCTTATGATTTTCCTCAATCAAAAGACTACTTTCCACCTAATCAAAGAGGAGCAGTATTTGGAAGATTACTAGTCCAAGATTGGTACTTCAAAGGAGGAAGATTTCAATATACTAATAATGCTTATGTGGGTCTAGCTTTGCCTGGAGATGCAGGATCATGGCAAACAGAAAGCAAGGGCTATCAATTTTGGACTCGAGCTAACGCCAAAGGATACTTTAAAATAACTAATGCTGTGCCAGGTGACTATAATTTGTATGCTTGGGTCCCTGGATTTATTGGTGATTACAAATATAATGCTACAATCACTATCACCCCAGGAGGAGTTATAAAATTAAATTCACTTGTATATAATCCTCCCAGAAATGGACCAACCATTTGGGAAATTGGTATCCCAGATCGATTGGCTTCAGAATTTCATATACCAGACCCTTACCCTACTCTCATGAACAAATTATACACCAAAAAACACAGTGACAAGTTTAGGCAATATGGATTGTGGAAACGTTACAGTGATATATATCCAAATGATGATCTTGTTTACACTGTGGGTGTTAACAATTATAGGGATTGGTTTTTTGCTCATGTTACAAGAAGCACAGGAAATAAAACATATGAACCAACAACATGGCAGATTATATTTGAACATAAAAATGACATAATCAGTGGAAACTACACACTTCAACTGGCCTTAGCTAGTGCTGCTGATTCTAACCTACAGGTTCGTTTCAATGACCGCAGCAAAGATCCACCTCATTTTGCCACAGGGCGTATAGGAAGAGATAATGCCATAGCAAGGCATGGAATTCATGGATTGTATCGGCTGTTCAGCATTAATGTGTCTAGTAACCTTCTTGTGAAAGGAAAGAACATCATCTACCTGAGGCAGTCCAAAGCCGATACTCCTTTCCAAGGAGTTATGTACGATTATATTCGTTTAGAACGACCACCGGCAATTTGA 2058 0.3858 MMKMNVLSMKNNNVIFFWWFGMIVKFCFLLCACSQNTSLRGGLKKINNLGSTVVVKLNTENKQQLVVDNGIVSVTLSKPEGYLIGISYNGIDNILESEYKEHARGYFDVVWNELGKHGKVQRIHGTKFSVIVANENMVEVSFLRSWTSSMTGIDVPINIDIRYIFRRGDSGFYSYAIFDRHEGMPAVKVDQIRFVFRLNKDRFNYMALSDTRQRRMPTMRDVKTGQVLAYPEAVLLTKPHNPQFTGEVDDKYQYSCENINNTVHGWISLDSDPTVGFWMITPSNEFRNGGPIKQDLTSHAGPITLSMFVSPHYAGKDVTMEFEEGETYKKVFGPIFVYLNTASSENDNATLWSDAVQQFSKEVQSWPYDFPQSKDYFPPNQRGAVFGRLLVQDWYFKGGRFQYTNNAYVGLALPGDAGSWQTESKGYQFWTRANAKGYFKITNAVPGDYNLYAWVPGFIGDYKYNATITITPGGVIKLNSLVYNPPRNGPTIWEIGIPDRLASEFHIPDPYPTLMNKLYTKKHSDKFRQYGLWKRYSDIYPNDDLVYTVGVNNYRDWFFAHVTRSTGNKTYEPTTWQIIFEHKNDIISGNYTLQLALASAADSNLQVRFNDRSKDPPHFATGRIGRDNAIARHGIHGLYRLFSINVSSNLLVKGKNIIYLRQSKADTPFQGVMYDYIRLERPPAI* 686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g2090 685 Pfam Polysaccharide lyase family 4, domain II 405 477 IPR029413 -
Mtr8g2090 685 CDD RGL4_M 381 481 IPR029413 -
Mtr8g2090 685 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 56 683 - -
Mtr8g2090 685 Gene3D - 488 680 - -
Mtr8g2090 685 Gene3D - 57 357 IPR014718 GO:0030246
Mtr8g2090 685 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 56 683 - -
Mtr8g2090 685 CDD RGL4_N 58 347 - -
Mtr8g2090 685 Gene3D - 379 480 - -
Mtr8g2090 685 CDD RGL4_C 493 680 - -
Mtr8g2090 685 Pfam Rhamnogalacturonate lyase family 51 248 IPR010325 -
Mtr8g2090 685 SUPERFAMILY Galactose-binding domain-like 488 680 IPR008979 -
Mtr8g2090 685 SUPERFAMILY Galactose mutarotase-like 59 346 IPR011013 GO:0003824|GO:0005975|GO:0030246
Mtr8g2090 685 Pfam Polysaccharide lyase family 4, domain III 491 679 IPR029411 -
Mtr8g2090 685 SUPERFAMILY Starch-binding domain-like 377 480 IPR013784 GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g2090 Mtr-Chr8 30883275 30890324 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g2090 65 684 Polysaccharide Lyase AT1G09910 55.698 0.0 708
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g2090 K18195 - gmx:100776664 1057.74