Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g2088 ATGATGAAGATGAAAGTGTTGAGTAAGAAGAACAAACATGTTATCTTATATTGGTGGTTTGGAATGATTGTGCAATTCTGTTTCTTGTTATGTGTTTGTGCTGAGAAGACATCATTGAGAGGAGGAATCAATAGCCTAAAATCAAAATCAATAGTCAAGCTGAATACACAAGACAAACACAAGTTGGTTGTTGATAATGGCATTGTTTCTGTGTCTATGGCAAGACCAGAGGGATACATCCTTGGAATATCGTATAATGGAATTGACAATGTTCTTGATTCTGAAAACCAAGAACTAGATAGAGGGTACTTCGACGTTGTTTGGAATGAACCTGGAGAGCAAAATCTTAGTAAAAGTACTTTCCAGAGAATCCATGGGACAAATTTTTCAGTTATTGCAGCTGATGAGAATATGGTGGAGGTTTCATTTTCAAGATTATGGACACATTCCATGAGTGGCAAAAATGTCCCCATAAACATAGATATAAGGTACATTTTCAGAAGTGGTGATTCTGGATTTTATTCATATGCGATATTCAATCGACCGAAAGGAATGCCAGGAATTGAGGTTGATCAAATTAGATTTGTTTTCAAACTCGATAAAGACAGGTTCAAGTACATGGCAATATCTGATACAAGACAAAGAAACATGCCAGCAATGAAAGATAGAAACACAGGTCAAGTACTAGCTTATCCTGAAGCAGTTCTATTAACCAACCCAATTAACCCACAATTTAGAGGAGAGGTGGATGATAAATATCAATACTCTTGTGAGAACAAAGATAACACAGTTCATGGATGGATTGGTTTTGATTCTGATCCACCAGTGGGTTTCTGGATGATAACACCGAGTAATGAGTTTCGCAATGGTGGACCCATTAAGCAAGATCTTACTTCTCATGTTGGACCAATCGCTCTTTCGATGTTTGTGAGCACACACTATGCTGGAAAGGAAGTAACCATGGCATTTCAAGAAGGAGAGACCTATAAAAAGGTTTTTGGACCTGTATTTGTCTACCTTAACACTGCTTCAAGTGAGAATGATAATGCAACTCTCTGGTCAGATGCAGTACAACAGTTATCCAAGGAAGTCCAAAGTTGGCCTTATGATTTTCCTCAATCACAAGATTACTTTCCACCTAATCAAAGGGGAGCAGTATTTGGAAGATTACTAGTCCAAGATTGTTCCAGGTACTTCGAAGGAGGAAGATATCAATATGCTAATAATGCTTATGTGGGTCTAGCTTTGCCTGGAGATGCTGGATCATGGCAGAGAGAAAGCAAGGGCTATCAATTTTGGACTCAAACTGATGCCAAGGGATACTTTAAAATAACTAATGTTGTGCCAGGTCACTATAATCTGTTTGGTTGGGTCTCTGGATTCATTGGTGATTACAAATATAATAGTACAATCACAATCACCCCAGGAGGAGTCATCAAATTAAATTCACTTGTATATAATCCTCCTAGAAATGGACCAACCATTTGGGAAATTGGTATTCCAGATCGTTTGACTTCAGAATTCCATGTACCAGAACCTTACCCTACTCTCATGAACAAATTATACACTGAAGGAAGAGACAATTTTAGGCAATATGGGTTGTGGGAACGTTACACTGAAATGTATCCAACTGATGATCTTATTTACACTCTGGGTGTTAACAAGAATAAAGATTGGTTTTATGCTCATGTTACAAGAAACACAGAAAATAATACATATGAACCAACAACATGGCAAATTATATTTGAACATCAACATGACTTAAAGAGTGGAAACTACACACTACAACTTGCCTTGGCCAGTGCTGCTGATGCTTACCTACAGGTTCGGTTCAATGATCGAAGTGTATATCCACCCCACTTCGCGACAGGGCATATAGGAAGAATCCGAGGAGACAATTGCATACAAAGACATGGAATTCATGGATTGTATAGGTTGTTCAGTATTGATGTGCCAAGTAATCTTCTTTTGAAAGGAAAGAACATCATATATCTAACGCAGACCAACGCCGATACTCCTTTCCAAGGAGTTATGTATGATTACATCCGTTTAGAACAACCACCAGCAACTTGA 2073 0.3811 MMKMKVLSKKNKHVILYWWFGMIVQFCFLLCVCAEKTSLRGGINSLKSKSIVKLNTQDKHKLVVDNGIVSVSMARPEGYILGISYNGIDNVLDSENQELDRGYFDVVWNEPGEQNLSKSTFQRIHGTNFSVIAADENMVEVSFSRLWTHSMSGKNVPINIDIRYIFRSGDSGFYSYAIFNRPKGMPGIEVDQIRFVFKLDKDRFKYMAISDTRQRNMPAMKDRNTGQVLAYPEAVLLTNPINPQFRGEVDDKYQYSCENKDNTVHGWIGFDSDPPVGFWMITPSNEFRNGGPIKQDLTSHVGPIALSMFVSTHYAGKEVTMAFQEGETYKKVFGPVFVYLNTASSENDNATLWSDAVQQLSKEVQSWPYDFPQSQDYFPPNQRGAVFGRLLVQDCSRYFEGGRYQYANNAYVGLALPGDAGSWQRESKGYQFWTQTDAKGYFKITNVVPGHYNLFGWVSGFIGDYKYNSTITITPGGVIKLNSLVYNPPRNGPTIWEIGIPDRLTSEFHVPEPYPTLMNKLYTEGRDNFRQYGLWERYTEMYPTDDLIYTLGVNKNKDWFYAHVTRNTENNTYEPTTWQIIFEHQHDLKSGNYTLQLALASAADAYLQVRFNDRSVYPPHFATGHIGRIRGDNCIQRHGIHGLYRLFSIDVPSNLLLKGKNIIYLTQTNADTPFQGVMYDYIRLEQPPAT* 691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g2088 690 Gene3D - 491 685 - -
Mtr8g2088 690 Gene3D - 54 361 IPR014718 GO:0030246
Mtr8g2088 690 CDD RGL4_N 62 348 - -
Mtr8g2088 690 Gene3D - 381 483 - -
Mtr8g2088 690 CDD RGL4_C 496 685 - -
Mtr8g2088 690 SUPERFAMILY Galactose-binding domain-like 491 685 IPR008979 -
Mtr8g2088 690 Pfam Rhamnogalacturonate lyase family 49 249 IPR010325 -
Mtr8g2088 690 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 53 689 - -
Mtr8g2088 690 Pfam Polysaccharide lyase family 4, domain III 494 684 IPR029411 -
Mtr8g2088 690 CDD RGL4_M 382 484 IPR029413 -
Mtr8g2088 690 SUPERFAMILY Galactose mutarotase-like 56 347 IPR011013 GO:0003824|GO:0005975|GO:0030246
Mtr8g2088 690 SUPERFAMILY Starch-binding domain-like 378 483 IPR013784 GO:0030246
Mtr8g2088 690 Pfam Polysaccharide lyase family 4, domain II 408 480 IPR029413 -
Mtr8g2088 690 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 53 689 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g2088 Mtr-Chr8 30863961 30871231 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g2088 50 687 Polysaccharide Lyase AT1G09890 54.899 0.0 705
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g2088 K18195 - gmx:100776664 1035.79