Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g2087 ATGAAGATGAAGATGTTGAGTAAGAAGAACAATAATGTTATCTTCTTTTGGTGGTTAGGAATGATTATGAAGTTTTGTTTCTTGCTCTGTGCTTGTTCTGAGAATACATCATTAAGTGGAGGATCAAAGAAGATCAATAGCTTTGGATCAACATCTATAGTTAAGCTGAATACAGAAGACAATCAACAGTTGGTTATTGACAATGGCATTGTTTCTGTGACTTTGTCAAGACCCGAGGGGCACGTCATTGCAATATCGTATAATGGAATTGACAACATTCTTGAATCTGAAAACGATGAAGATGATAGAGGGTACTTCGACGTTGTTTGGAATGAAGTAGGAAAGCCTAGCACCTTCCAAAGGTATAACTCTTTTCCTTCAAAAATAAGAATCGAAGGAACAAACTTTTCGGTTATAGCAGCTGATGAGAATATGGTGGAGGTTTCATTTTTAAGATCATGGACATCTTCAATGAGTGGCAAAGATGTCCCTATAAACATAGACAAAAGATACATTTTCAGAAGTGGTGATTCAGGATTTTATTCATATGCAATATTTGATCGCCCTGAAGGAATGCCAGCAGTTGAGGTTGATCAAATTAGATATGTTTTCAAACTCAATCAACATAGGTTCAAGTACATGGCATTATCTAATACAAGGCAAAGAAGCATGCCAACAATGAGAGATAGAGACACAGGTCAAGTACTTGCTTACAAAGAAGCAGTTCTATTAACAAAACCAATTAATCCACAATTTAGAGGAGAGGTGGATGATAAATATCAGTACTCATGTGAGAACACAGATAACACTGTTCATGGTTGGATTAATTTTGATTCTGATGAACCTGTTGGTTTTTGGATGATAACACCTAGTAATGAATTTCGTAATGGTGGACCAATTAAGCAAGATCTTACTTCTCATGTTGGACCCATCACTCTCTCGATGTTTGTGAGCACACACTATGCTGGAAAGGAAGTAACCATGGCATTTGAAGAAGGTGAAACTTATAAAAAGGTTTTTGGTCCTGTGTTTGTTTACCTTAACACTGATTCAAGCAAGAATGATAATACAACTCTCTGGTCAGATGCTGTACAACAGTTATCCAAGGAAGTCAAAAGCTGGCCTTATGATTTTCCTAAATCACAAGATTATTTTCCACCTAATCAACGAGGAGCAGTATTTGGAAGATTACTAGTCCAAGATTGGTACTTGCAAGGAGGGAAATTTCAGGGTACTAATGCTTATGTGGGTCTAGCTTTGCCTGGAGATGCAGGATCATGGCAAAGAGAAAGCAAGGGATATCAATTTTGGACTCGATCTGACGCCAAGGGATACTTTAAAATAAACAATATTGTTCCAGGTGACTATAATTTGTACGGTTGGGTCCCTGGATTCATTGGTGATTACAAGTATAATGGTACAATCACCATTACACCAGGAGGAGTCATAAACTTAAATTATCTTGTATATAATCCTCCAAGAAATGGACCAACCATTTGGGAAATCGGTATTCCAAATCGCTTGGCTTCGGAATTTCATGTACCAGATCCTTACCCTACTCTCATGAACAAATTATACACCGCACAACGAAGAGACAAGTTTAGGCAATATGGGTTGTGGGAACGTTACACTGATATGTATCCAAATGATGATCTTATTTACACTGTCGGTGTTAACAAGTATAGAGATTGGTTTTATGCTCATGTTACAAGAAGCAAAGGTAATAAAACATATGAACCAACAACATGGCAAATTATATTTGAACATGAACAAGACATAATCAGTGGAAACTACACACTGCAACTGGCCTTGGCTAGTGCTGCCGATGCTGACCTACAGGTACGGTTCAATGATCCTAGCATATATCCACCGCACTTTGCGACAGGGCTCATAGGAGGAGACAATGCCATAGCAAGACATGGAATTCATGGATTGCATTGGTTGTTCAGCATTGACGTGCCTAGTGATCTTCTTGTGAAAGGAAAGAACATCGTCTATCTGAGACAATCAAAAGCTCTTAGTCCGTTTCAAGGAGTTATGTATGATTATATCCGTTTAGAACGACCATCGTCTAAAACTTGA 2082 0.3804 MKMKMLSKKNNNVIFFWWLGMIMKFCFLLCACSENTSLSGGSKKINSFGSTSIVKLNTEDNQQLVIDNGIVSVTLSRPEGHVIAISYNGIDNILESENDEDDRGYFDVVWNEVGKPSTFQRYNSFPSKIRIEGTNFSVIAADENMVEVSFLRSWTSSMSGKDVPINIDKRYIFRSGDSGFYSYAIFDRPEGMPAVEVDQIRYVFKLNQHRFKYMALSNTRQRSMPTMRDRDTGQVLAYKEAVLLTKPINPQFRGEVDDKYQYSCENTDNTVHGWINFDSDEPVGFWMITPSNEFRNGGPIKQDLTSHVGPITLSMFVSTHYAGKEVTMAFEEGETYKKVFGPVFVYLNTDSSKNDNTTLWSDAVQQLSKEVKSWPYDFPKSQDYFPPNQRGAVFGRLLVQDWYLQGGKFQGTNAYVGLALPGDAGSWQRESKGYQFWTRSDAKGYFKINNIVPGDYNLYGWVPGFIGDYKYNGTITITPGGVINLNYLVYNPPRNGPTIWEIGIPNRLASEFHVPDPYPTLMNKLYTAQRRDKFRQYGLWERYTDMYPNDDLIYTVGVNKYRDWFYAHVTRSKGNKTYEPTTWQIIFEHEQDIISGNYTLQLALASAADADLQVRFNDPSIYPPHFATGLIGGDNAIARHGIHGLHWLFSIDVPSDLLVKGKNIVYLRQSKALSPFQGVMYDYIRLERPSSKT* 694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g2087 693 Gene3D - 388 487 - -
Mtr8g2087 693 SUPERFAMILY Galactose mutarotase-like 58 356 IPR011013 GO:0003824|GO:0005975|GO:0030246
Mtr8g2087 693 Pfam Rhamnogalacturonate lyase family 53 256 IPR010325 -
Mtr8g2087 693 CDD RGL4_C 500 687 - -
Mtr8g2087 693 CDD RGL4_N 57 355 - -
Mtr8g2087 693 Pfam Polysaccharide lyase family 4, domain III 498 686 IPR029411 -
Mtr8g2087 693 CDD RGL4_M 389 486 IPR029413 -
Mtr8g2087 693 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 57 691 - -
Mtr8g2087 693 Pfam Polysaccharide lyase family 4, domain II 412 484 IPR029413 -
Mtr8g2087 693 SUPERFAMILY Galactose-binding domain-like 495 687 IPR008979 -
Mtr8g2087 693 Gene3D - 56 367 IPR014718 GO:0030246
Mtr8g2087 693 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 57 691 - -
Mtr8g2087 693 Gene3D - 495 687 - -
Mtr8g2087 693 SUPERFAMILY Starch-binding domain-like 384 488 IPR013784 GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g2087 Mtr-Chr8 30854575 30862496 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g2087 52 690 Polysaccharide Lyase AT1G09890 55.194 0.0 705
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g2087 K18195 - gmx:100776664 1051.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g1286 5 13276120 13282187 Mtr8g2087 8 30854575 30862496 PCT