Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g2065 ATGAATAACATCTGGGACGACAACTCCTCCGTCATGGAAGCTTTCATGACCACCTCCGACATCTCTAGTTTCTGGCTTCCAACACCACATTCCGCCACTTCAACCACTGCTGCACCAGTGCCTCCTCCACCACAACAGTCTCTATTCAATCAAGAGACTCTCCAGCACCGTCTTCAAGCTCTTATCGAAGGAGCGAAAGAAAGCTGGACCTACGCGATTTTCTGGCAATCTTCTTACGACTACACCATGGCTACACCTCTACTCGGCTGGGGTGATGGATATTACAAAGGAGAAGATGACAAAGTAAAATTGAAACGAGTTACACCTCCGGAAGAACAGGCTCATCGTAGAAAGATTCTCCGTGAGCTTAATACGTTAATTTCTGGTGGTTCATCTGTCTCTGATGATGCCGTTGAGGAAGATGTCACCGACACTGAGTGGTTTTTTCTCACGTCGATGACTCAATCCTTTGTCAACGGCACCGGATCACTGAGTCAGGCTTATTTCAATTCAACCCCGGTGTGGATCACCGGGGCTGAGAGGCTTTCCGGTTCACCATGTGAACGGGCCCGTGAAGCACGGGTCCATGGGTTTCAGACCTTGGTATGTATACCAACTTCTTCAAGTGGGGTGGTTGAGCTTGCTTCTACGGAAATGATTCCATACAACGCTGATCTAATGGAGAAGATTCGTGTTTTGTTTAATTTTAACAATCCTGAAACAGGTTCGTGGCCGTTGAATTCCATTACAACGAGCGAGAACGATCCTTCCTCGGTCTGGCTCAACGATCTCTCCGCCTCTGCAGCCATTGAAATTCGAGAGTCCACAGTTAACACTGCCGCTGTGCCTGCAATGAACGCAACCATTCCTGCAAATGCAACAGTTGGTAAAACATTACCGTTTGAAACAAATGGTTCGACCAGTACTCTAACGGAAACAACTGCAGTTAACTTTGCTCAGCGCCAGAATCAGAACAACCAGAACCATAGCTTTTTTCTGAAGGAACTAAATTTTTCTGGTTCAATGAAACCGGAATCCGGGGAGATTCTGAGTTTCGGTGAAAGTAAAAAAAGTTCTTATATCACCGGAAATGGAACTTTCTTTTCTGGTCAGTCACAGTTCGTCGCTGGTGAAGAAAACAGAAAAAGAAAGTCTCCTATATCCAGAAGCAGCATTGACGATGGAATGCTTTCGTTTACTTCCGGTGTAGTCTTGCCGTCTTCAAATATGAAATCAAGCAGCAGAGGCGGAGGTGGAGATTCTGATCATTCAGATCTAGATGTTTCTGCTGTGAAGGAAGGTGAGAGCAGCAGAGTTGTAGAGCCAGGGAAGCGACCTAAGAAAAGAGGTCGAAAACCAGCTAATGGAAGAGAAGAACCATTGAATCATGTAGAAGCAGAGAGACAAAGAAGAGAAAAGCTTAACCAAAAATTCTATGCTCTACGTGCTGTGGTTCCAAATGTTTCTAAGATGGACAAAGCATCGCTGCTAGGCGATGCTATATCTTATATAAACGAATTGAAATCGAAGCTACAAGGGCTGGAATCGTCAAAAGGTGAATTGGAGAAACAATTAGGTGCAACAAAGAAGGAATTAGAACTTGTTGCAAGCAAAAATCAAAGTCAAAATCCAATTCCATTAGATAAAGAAAAGGAGAAAACAACAAGCTCAACAAGCTCTTCTAAGTTAATTGACTTGGATATTGATGTGAAGATTATGGGTTGGGATGCTATGATTAGGATTCAATGCAGCAAGAAGAATCACCCTGCGGCGAAGTTGATGGCGGCGTTGAAAGAATTAGACCTTGATGTGAATCATGCTAGTGTGTCTGTTGTGAATGATTTGATGATTCAACAAGCTTCTGTTAACATGGGAAGTAGATTTTACACACAAGAACAGCTTTTGTCTCTTCTTTCTTCCAAAATTGGTGATGCACAAGGAGATTAA 1947 0.4366 MNNIWDDNSSVMEAFMTTSDISSFWLPTPHSATSTTAAPVPPPPQQSLFNQETLQHRLQALIEGAKESWTYAIFWQSSYDYTMATPLLGWGDGYYKGEDDKVKLKRVTPPEEQAHRRKILRELNTLISGGSSVSDDAVEEDVTDTEWFFLTSMTQSFVNGTGSLSQAYFNSTPVWITGAERLSGSPCERAREARVHGFQTLVCIPTSSSGVVELASTEMIPYNADLMEKIRVLFNFNNPETGSWPLNSITTSENDPSSVWLNDLSASAAIEIRESTVNTAAVPAMNATIPANATVGKTLPFETNGSTSTLTETTAVNFAQRQNQNNQNHSFFLKELNFSGSMKPESGEILSFGESKKSSYITGNGTFFSGQSQFVAGEENRKRKSPISRSSIDDGMLSFTSGVVLPSSNMKSSSRGGGGDSDHSDLDVSAVKEGESSRVVEPGKRPKKRGRKPANGREEPLNHVEAERQRREKLNQKFYALRAVVPNVSKMDKASLLGDAISYINELKSKLQGLESSKGELEKQLGATKKELELVASKNQSQNPIPLDKEKEKTTSSTSSSKLIDLDIDVKIMGWDAMIRIQCSKKNHPAAKLMAALKELDLDVNHASVSVVNDLMIQQASVNMGSRFYTQEQLLSLLSSKIGDAQGD* 649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g2065 648 MobiDBLite consensus disorder prediction 372 468 - -
Mtr8g2065 648 Coils Coil 504 531 - -
Mtr8g2065 648 CDD bHLH_AtAIB_like 455 531 - -
Mtr8g2065 648 MobiDBLite consensus disorder prediction 452 468 - -
Mtr8g2065 648 SMART finulus 464 513 IPR011598 GO:0046983
Mtr8g2065 648 PANTHER MYC 43 643 IPR045084 GO:0003700|GO:0006355
Mtr8g2065 648 PANTHER TRANSCRIPTION FACTOR MYC2 43 643 - -
Mtr8g2065 648 Pfam Helix-loop-helix DNA-binding domain 462 507 IPR011598 GO:0046983
Mtr8g2065 648 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 54 234 IPR025610 -
Mtr8g2065 648 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 461 527 IPR036638 GO:0046983
Mtr8g2065 648 Gene3D - 457 536 IPR036638 GO:0046983
Mtr8g2065 648 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 458 507 IPR011598 GO:0046983
Mtr8g2065 648 MobiDBLite consensus disorder prediction 535 558 - -
Mtr8g2065 648 MobiDBLite consensus disorder prediction 391 417 - -
Mtr8g2065 648 MobiDBLite consensus disorder prediction 418 443 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g2065 Mtr-Chr8 30551836 30554319 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g2065 3 643 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G32640 50.977 0.0 577
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mtr8g2065 bHLH-MYC_N 1.6e-48 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g2065 K13422 - gmx:100790854 742.651
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g2065 8 30551836 30554319 Mtr8g2065 8 30551836 30554319 ECH