Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g2064 ATGGCTTCCGATGGTTTCACCGACAAGAACCTCGTGTTTAGAAAACTCAAGTTGAAGTCTGAAAATAAGATGTGTTTTGATTGCAATACGAAGAATCCAACATGGGCATCAGTAACATATGGGATCTTCCTCTGCATTGATTGTTCTGCTGTTCATCGGAGTCTCGGTGTTCATATTAGTTTTGTGAGATCTACAAACTTAGACTCATGGACTCCTGAGCAACTAAAAATAATGAGTTTTGGAGGAAACAGTCGTGCACAGATTTTCTTTAAGCAACATGGTTGGACCGACGGTGGTAAAATAGAAGCAAAGTATACATCCAGAGCTGCAGAGTTGTACAGGCAAATTCTTACAAAGGAAGTAGCTAAAAGTATGGCCTTGGAGAAAGGCTTGCCTTCGTCACCTGTTGCTTCACAGAGCTCGAATGGATTTCTTGATGTCAGGACCAGTGAAGTACTGAAAGAAAACACGTTAGATAAGGCAGAAAAGCTTGAGAGTACATCTTCACCTAGAGCTTCACATACATCAGCATCAAATAATTTGAAGAAGTCTATTGGTGGTAAAAAGCCTGGGAAGAGTGGGGGACTTGGTGCCCGTAAGCTCAATAAGAAGCCAAGTGAGTCTTTCTATGAGCAAAAACCTGAAGAACCACCTGCTCCAGTTCCATCCACGACAAACAACAATGTGTCTGCCAGGCCATCTATGACTTCTCGTTTTGAGTATGTAGATAATGTTCAGTCATCTGAGTTGGATTCTAGAGGTTCAAATACATTCAATCACGTTTCTGTACCAAAGTCATCAAACTTCTTTGCAGACTTTGGAATGGATAGTGGTTTCCCAAAGAAATTTGGCTCAAACACCTCAAAAGTGCAAATTGAGGAATCTGATGAAGCAAGAAAGAAGTTCTCAAATGCTAAATCTATTTCGTCATCTCAATTTTTTGGAGACCAGAACAAAGCAAGAGATGCTGAGACTCGAGCTACTTTGTCAAAGTTTTCAAGTTCATCTGCCATCTCCAGTGCGGATTTTTTTGGTGACTCTGCAGATTCCTCCATTGATCTTGCTGCTAGCGATCTCATTAATCGATTATCTTTTCAGGCACAACAAGATATATCTTCCCTTAAGAACATTGCTGGAGAGACTGGGAAAAAACTCAGCTCCCTGGCCTCCTCCTTGATGACCGATCTTCAGGACCGAATCCTCTAA 1206 0.4138 MASDGFTDKNLVFRKLKLKSENKMCFDCNTKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWTPEQLKIMSFGGNSRAQIFFKQHGWTDGGKIEAKYTSRAAELYRQILTKEVAKSMALEKGLPSSPVASQSSNGFLDVRTSEVLKENTLDKAEKLESTSSPRASHTSASNNLKKSIGGKKPGKSGGLGARKLNKKPSESFYEQKPEEPPAPVPSTTNNNVSARPSMTSRFEYVDNVQSSELDSRGSNTFNHVSVPKSSNFFADFGMDSGFPKKFGSNTSKVQIEESDEARKKFSNAKSISSSQFFGDQNKARDAETRATLSKFSSSSAISSADFFGDSADSSIDLAASDLINRLSFQAQQDISSLKNIAGETGKKLSSLASSLMTDLQDRIL* 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g2064 401 CDD ArfGap_ArfGap2_3_like 8 123 - -
Mtr8g2064 401 Gene3D Arf GTPase activating protein 3 136 IPR038508 -
Mtr8g2064 401 PRINTS HIV Rev interacting protein signature 22 41 IPR001164 GO:0005096
Mtr8g2064 401 PRINTS HIV Rev interacting protein signature 41 58 IPR001164 GO:0005096
Mtr8g2064 401 PRINTS HIV Rev interacting protein signature 62 83 IPR001164 GO:0005096
Mtr8g2064 401 MobiDBLite consensus disorder prediction 168 183 - -
Mtr8g2064 401 Pfam Putative GTPase activating protein for Arf 13 108 IPR001164 GO:0005096
Mtr8g2064 401 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD9-RELATED 1 401 - -
Mtr8g2064 401 PANTHER ADP-RIBOSYLATION FACTOR GTPASE ACTIVATING PROTEIN 3, ISOFORM H-RELATED 1 401 - -
Mtr8g2064 401 SMART arf_gap_3 10 126 IPR001164 GO:0005096
Mtr8g2064 401 ProSiteProfiles ARF GTPase-activating proteins domain profile. 10 115 IPR001164 GO:0005096
Mtr8g2064 401 SUPERFAMILY ArfGap/RecO-like zinc finger 12 125 IPR037278 -
Mtr8g2064 401 MobiDBLite consensus disorder prediction 156 234 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g2064 Mtr-Chr8 30528509 30533027 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g2064 13 84 C2H2 Transcription Factor Family AT3G07940 49.315 4.32e-19 84.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g2064 K12493 K11855 gmx:100785169 607.831
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g2064 8 30528509 30533027 Mtr8g2064 8 30528509 30533027 ECH