Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g2063 ATGGCTTCCGATAGCTTCACCGACAAGAACGCCGTTTTCAGAAAACTCAAAACCAAATCCGAAAACAAGAGTTGTTTCGATTGCAATGCGAAGAATCCAACATGGGCGTCTGTAACGTATGGGATCTTCCTCTGCATTGATTGCTCTGCTGTTCATCGAAGTCTCGGTGTTCATATCAGTTTCGTGAGATCTACGAACTTAGACTCGTGGACTCCTGAGCAACTTAAAATGATGAGCTTTGGAGGAAACAGTAGGGCACAGGTTTTCTTTAGGCAGCATGGATGGAACGGAGATGGTAAAGTAGAGGCAAAGTATACATCCAGAGCTGCAGAGTTGTATAAGCAACTGCTTTCAAAGGAAGTTGCTAAAAGTATGTCTGAGGAGGCTGCCTTGTCTGCACCACCTGCTGCTTCTTCTCAGTCTGCCCAAGGGACTAATGGACTTCCTGATGTTAAGACAAATGAAGTCCCAATTGAAAAGACTGTGGAAAAAACTGTGGAGAAGCCAGAAAAGACCGAGAGCAGTTCTTCACCCAGAGCTTATACTGCAGTTTCGAATAATTTGAAGAAGCCTATTGGAGCCAAAAAAACTGGTAAGAGTGGGGGACTTGGAGCCCGTAAGCTCACTAGAAAGCCAAGCGAGTCCCTCTATGAGCAGAAGCCTGAAGAACTACCTGCTCCAGTTTCATCATCGACAATTACAAAAAACAACTTGCCTTCTGGGCCACCTCTAACATCTCGGTTTGAGTATACAGAAGATGTCCAATCATCTGAGTTGAATTCTGGAGGTTCAAATGTAACCGGTCACGTGTCTGTACCAAAGTCATCATCAAGCTTCTTTTCGGACTTCGGAATGGATAGTGGCTTTCAAAAGAAATCTGGGCCTAGCTCCTCCAAAGTGCAAGAATCTGATGAAGCAAGAAAGAAGTTCTCAAATGCAAAGTCTATTTCTTCATCCCAATTTTTTGGAGACCAGAACAAGGCTAATGCGGATGCTCAAGCAACTTTATCAAAGTTTTCAGGTTCATCTGCCATCTCCAGTGCTGATCTTTTTGGTGACTCGAGTGACAACGTTGATCTTGCTGCTAGTGACCTTATCAATAGAATATCTTTCCAGGCACAACAGGATATCTCTTCCCTTAAGAACATTGCTGGAGAGACTGGGAAAAAACTCACCTCCTTGGCATCCTCCTTGATGACAGATCTTCAGGACCGAATCCTCTAA 1224 0.4412 MASDSFTDKNAVFRKLKTKSENKSCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWTPEQLKMMSFGGNSRAQVFFRQHGWNGDGKVEAKYTSRAAELYKQLLSKEVAKSMSEEAALSAPPAASSQSAQGTNGLPDVKTNEVPIEKTVEKTVEKPEKTESSSSPRAYTAVSNNLKKPIGAKKTGKSGGLGARKLTRKPSESLYEQKPEELPAPVSSSTITKNNLPSGPPLTSRFEYTEDVQSSELNSGGSNVTGHVSVPKSSSSFFSDFGMDSGFQKKSGPSSSKVQESDEARKKFSNAKSISSSQFFGDQNKANADAQATLSKFSGSSAISSADLFGDSSDNVDLAASDLINRISFQAQQDISSLKNIAGETGKKLTSLASSLMTDLQDRIL* 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g2063 407 Pfam Putative GTPase activating protein for Arf 12 113 IPR001164 GO:0005096
Mtr8g2063 407 ProSiteProfiles ARF GTPase-activating proteins domain profile. 10 128 IPR001164 GO:0005096
Mtr8g2063 407 Gene3D Arf GTPase activating protein 1 139 IPR038508 -
Mtr8g2063 407 MobiDBLite consensus disorder prediction 133 150 - -
Mtr8g2063 407 MobiDBLite consensus disorder prediction 225 270 - -
Mtr8g2063 407 SUPERFAMILY ArfGap/RecO-like zinc finger 11 123 IPR037278 -
Mtr8g2063 407 MobiDBLite consensus disorder prediction 289 311 - -
Mtr8g2063 407 PANTHER ADP-RIBOSYLATION FACTOR GTPASE ACTIVATING PROTEIN 3, ISOFORM H-RELATED 1 407 - -
Mtr8g2063 407 CDD ArfGap_ArfGap2_3_like 8 123 - -
Mtr8g2063 407 MobiDBLite consensus disorder prediction 129 270 - -
Mtr8g2063 407 SMART arf_gap_3 10 126 IPR001164 GO:0005096
Mtr8g2063 407 PRINTS HIV Rev interacting protein signature 22 41 IPR001164 GO:0005096
Mtr8g2063 407 PRINTS HIV Rev interacting protein signature 41 58 IPR001164 GO:0005096
Mtr8g2063 407 PRINTS HIV Rev interacting protein signature 62 83 IPR001164 GO:0005096
Mtr8g2063 407 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD9-RELATED 1 407 - -
Mtr8g2063 407 MobiDBLite consensus disorder prediction 156 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g2063 Mtr-Chr8 30520606 30526185 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g2063 13 90 C2H2 Transcription Factor Family AT4G21160 46.835 4.22e-20 89.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g2063 K12493 K11855 gmx:100785169 595.119