Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g2051 ATGTCGCGTCCCGATTATCCAACAACATGGATTCCTTATATAAACAGCAAAGATTGTTCTCAAGGATTTTGTAGCGTGTATTGTCCGCAATGGTGCTACATAGTTTACACTCCTCCACCACCACCACCTTTTCAATACCCTGATGATGATTCAAAACCATATTTTTCTCCTCTTGTTATTGCAATTTTGGGAGTTTTAGCCACTGCTTTTTTACTACTAACTTATTACACTCTAATATCCAAATATTGTGGTCACAGAGAATCTTCAAGAAGAAACACCAATGACCCAGTTGATGAAATCCAAGAAAATCGCCGCGAAAATTGTCAAGTTTCAACCTTTGGTTTAGATGATGCTCAAATAAAATCCATTGCAGTTTTTAGCTACAAAAAAGGAGATGCTTTTTTTAGTACTACTGTCACAGATTGTTCAGTTTGTCTAAGTGAGTTTCAAGATGATGAAAGTGTTAGACTTTTACCAATGTGTAACCATGTTTTTCATCTTCCTTGTATTGATACATGGCTTAAATCTAACTCTAGTTGTCCTCTATGTCGTTCTAGCGTATTCACTTCGAATGCTTCAACACATCATGTTCAAGTTCCGGTTACAATTATAGAACTTCCTTCAAGAAATGAAACTTTTTTAGAAGAGCAACAAATAGTTGTGGAAGAAGCAATGATGCAACATAGTAGAGTTGAGTCGAAGGCGCCATCATTGCGCGCTTTTAGTGATTTGTGTAATTTGCAAGGAAGAGAAAGAATAATCGAAATTAGAGACGAAGTTTGTGAATCGATCGGAAGGTCAGTGTCTATGGATCATTCATTTCAAAATGGTTTTTCAATTGGTGATGTGTTGAATATGAATGAAGATGAAGATGATTCTTGTGAAGAAGGATGTTCAATGGATGTTAGTTCATCAAAGATATCACAAGGAGAAAGTAGTAAATCAAGGTACAAAAGAAGAGTGTTGCATTGTGTTATGAGTCCAATTGCAATGAAGAGATCGTTTTCTAATGGAAGATTTTCACTTGGTAAAATTGATAGAGGAAAAAGGCAAGGAATTTTGCCTGTTTGA 1071 0.3576 MSRPDYPTTWIPYINSKDCSQGFCSVYCPQWCYIVYTPPPPPPFQYPDDDSKPYFSPLVIAILGVLATAFLLLTYYTLISKYCGHRESSRRNTNDPVDEIQENRRENCQVSTFGLDDAQIKSIAVFSYKKGDAFFSTTVTDCSVCLSEFQDDESVRLLPMCNHVFHLPCIDTWLKSNSSCPLCRSSVFTSNASTHHVQVPVTIIELPSRNETFLEEQQIVVEEAMMQHSRVESKAPSLRAFSDLCNLQGRERIIEIRDEVCESIGRSVSMDHSFQNGFSIGDVLNMNEDEDDSCEEGCSMDVSSSKISQGESSKSRYKRRVLHCVMSPIAMKRSFSNGRFSLGKIDRGKRQGILPV* 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g2051 356 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 114 192 IPR013083 -
Mtr8g2051 356 ProSiteProfiles Zinc finger RING-type profile. 142 184 IPR001841 -
Mtr8g2051 356 PANTHER RING-H2 FINGER PROTEIN ATL53-RELATED 1 346 - -
Mtr8g2051 356 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 1 346 IPR044675 -
Mtr8g2051 356 SUPERFAMILY RING/U-box 141 190 - -
Mtr8g2051 356 CDD RING-H2_PA-TM-RING 141 184 - -
Mtr8g2051 356 Pfam Ring finger domain 141 184 IPR001841 -
Mtr8g2051 356 SMART ring_2 142 183 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g2051 Mtr-Chr8 30355453 30357362 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g2051 1 315 C3H Transcription Factor Family AT3G03550 38.484 8.01e-59 192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g2051 - - vun:114176645 412.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g2051 8 30355453 30357362 Mtr8g2051 8 30355453 30357362 ECH
Mtr5g1235 5 12664758 12666557 Mtr8g2051 8 30355453 30357362 PCT