Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g2050 ATGAAGATTGAAAATTCTTGTGATAATACAATGGCTTTGGAAACTCTTTCATCATCATGCAATGAGTTTTCAAATTCAAACTTCATTATCTATGACACAATTTCTGCAACTTCATTTAGTAGTAACCTTATTGATACTACAAATGAGTCTAGTTTCTTGGAAAATACAATGAACTATGATCATGAACAAGCACATCATGAAGCAGATGCTGCAATATTTGATCAAAGTAACTGTTCTATGATGAATAGTAGAAAAAGACAATCTATGGAACAAGAAGAAACAATGAATAATCCTCAAGTGGTGCAAAGGAAAAAGAGGAGGAGAAAACCAAGAGTTTGTAAGAACAAAGAAGAAGCTGAGACACAAAGAATCACACATATTACTGTTGAAAGAAACCGTAGAAAACAAATGAATGAACATCTTGCTGTACTTCGTTCACTCATGCCTGAATCCTATGTTCAAAGGGGTGACCAAGCCTCAATAGTAGGTGGTGCCATAGAGTTTGTGAAGGAGTTAGAGCATCTCTTGCAATCACTTGAAGCTAGAAAGTTACAACTTGTACAACAAGAAGTAACACAAAACAATGAAGACATGGCAATATCAAAACCACCTTTTGCACAATTTTTTGTGTATCCTCAATATACATGGTCCCAAACACCTAACAAATACACATCCAAGACCAAAGCTGCCATAGCTGATATCGAGGTTACATTGATCGAGACTCATGCAAACCTTAGAATTCTCACTAGGACAAGACCAGGACAACTAACTAAATTAGTGGCTGGTTTTCAAAGACTCTTCCTTAGTATCCTACATCTCAATGTCACTACCATACAACCTTTGGTGTTCTACTCTATCAGTGCCAAGGTTGAAGAAGGATTCCAACTTGGATCAGTAGATGGAATTGCAACAGCAGTTCACCATTTACTTGGAAGAATTGAGGAAGAAGCTTCACTAACTTGCTGTTAA 969 0.3653 MKIENSCDNTMALETLSSSCNEFSNSNFIIYDTISATSFSSNLIDTTNESSFLENTMNYDHEQAHHEADAAIFDQSNCSMMNSRKRQSMEQEETMNNPQVVQRKKRRRKPRVCKNKEEAETQRITHITVERNRRKQMNEHLAVLRSLMPESYVQRGDQASIVGGAIEFVKELEHLLQSLEARKLQLVQQEVTQNNEDMAISKPPFAQFFVYPQYTWSQTPNKYTSKTKAAIADIEVTLIETHANLRILTRTRPGQLTKLVAGFQRLFLSILHLNVTTIQPLVFYSISAKVEEGFQLGSVDGIATAVHHLLGRIEEEASLTCC* 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g2050 322 CDD bHLH_AtFAMA_like 124 183 - -
Mtr8g2050 322 SMART finulus 127 178 IPR011598 GO:0046983
Mtr8g2050 322 MobiDBLite consensus disorder prediction 86 119 - -
Mtr8g2050 322 PANTHER MAX DIMERIZATION, MAD 11 320 - -
Mtr8g2050 322 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 121 172 IPR011598 GO:0046983
Mtr8g2050 322 Gene3D - 113 190 IPR036638 GO:0046983
Mtr8g2050 322 PANTHER TRANSCRIPTION FACTOR BHLH71 11 320 - -
Mtr8g2050 322 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 120 189 IPR036638 GO:0046983
Mtr8g2050 322 Coils Coil 169 189 - -
Mtr8g2050 322 Pfam Helix-loop-helix DNA-binding domain 122 173 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g2050 Mtr-Chr8 30347439 30350270 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g2050 113 290 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 55.738 1.75e-59 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mtr8g2050 HLH 5.9e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g2050 - - pvu:PHAVU_003G284500g 423.705
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g2050 8 30347439 30350270 Mtr8g2050 8 30347439 30350270 ECH