Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g2048 ATGTCTTTATCAGAATCTAAGTACGACCCCCCACCGGCTCCAGCACATAAGACCCCACCGGCACTAGTAGCCTTCACCCTCACCGTCCTCATCCTATGCTTTGTGGCTTTCAGCATTGTGTATCTTTGCAAGTATTGCTTTGCAGGCATTTTCCATATGTGGGCCTTGCATCGCACGGCCTCAGGATCCCTCGTTCGTCTCTCACCTGATAGGTCACCCCCTAGAGGACTCAACAATACCCTTATAAATGGATTCCCCACTTTCCTCTACTCTGATGTGAAAGACCACCGCAAGGAAAAAAGTTACAGCTTAGAATGTGCTATTTGCTTGCTAGAGTTCGAGGACGATAGCATGCTTCGTCTTCTAACTATTTGTTTCCATGTTTTCCACCAAGAATGTATCGACCTATGGTTTGAAAATCACAAGACATGTCCTGTTTGTCGAACCGATCTTGATGTACCTCCCAACCAAACAGGAGAGGAAAGTGTCAATACTAGTGAGATCACTAGAGCTCAAATACATGAAGGTGATCAACATGATGATCATGTGAGAAAGATCATGCAACAAGAAGAACATATATTTTCAAGATCACATTCAACAGGACATTCTATAGTAATGATTAGAGGTGAAGAAAAAGATGATGAAAAATATACATTGAGATTGCCTGAACATGTTATAAGGGGAGGACACAATATCACAAAGAGTTGTACAAATTACAGTGAGATGACATTGACAATGCCTACACCTTGTAGTAATTGTGGTTTTGTTAAACCGGTATCTGGTTCCTCTTCACTTGCTCAAGCTCAAGAGGCTTGA 816 0.4228 MSLSESKYDPPPAPAHKTPPALVAFTLTVLILCFVAFSIVYLCKYCFAGIFHMWALHRTASGSLVRLSPDRSPPRGLNNTLINGFPTFLYSDVKDHRKEKSYSLECAICLLEFEDDSMLRLLTICFHVFHQECIDLWFENHKTCPVCRTDLDVPPNQTGEESVNTSEITRAQIHEGDQHDDHVRKIMQQEEHIFSRSHSTGHSIVMIRGEEKDDEKYTLRLPEHVIRGGHNITKSCTNYSEMTLTMPTPCSNCGFVKPVSGSSSLAQAQEA* 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g2048 271 Pfam Ring finger domain 105 148 IPR001841 -
Mtr8g2048 271 SUPERFAMILY RING/U-box 81 157 - -
Mtr8g2048 271 PANTHER RING-H2 FINGER PROTEIN ATL29 3 243 - -
Mtr8g2048 271 SMART ring_2 106 147 IPR001841 -
Mtr8g2048 271 PANTHER RING FINGER DOMAIN-CONTAINING 3 243 - -
Mtr8g2048 271 ProSiteProfiles Zinc finger RING-type profile. 106 148 IPR001841 -
Mtr8g2048 271 CDD RING-H2_PA-TM-RING 105 148 - -
Mtr8g2048 271 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 67 154 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g2048 Mtr-Chr8 30329577 30330494 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g2048 4 243 C3H Transcription Factor Family AT2G35420 34.524 4.83e-38 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g2048 - - gmx:100815505 314.694