Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g2047 ATGGATTACAACAGAGACGGCAACGTCGTTCAAATCATCACCACCGGCGGTGGAGGCGCCGCCGATAGCTGGTCAACCGACCAAGCTGACTGGGCGACGGAAGATGAGTATCGTTACTGGAACGGAAACGATGCTGGTGGAGAAACAACTCCGTCTTCAAATTCACGTGCAGGAAGTGAGCCGCCGAGTAAGAAATCGAGAAGCAATTCGCAAGATGGTGGTGGTGGTGGTAGTGGAGGAGGATCGAATCGCGCGAAAGCGATTGGGAAAATGTTTTTTAAGACGAAACTATGCTGTAAGTTTCGTGTGGGGACATGTCCTTATATAACAAACTGTAATTTTGCTCATAGTGTGGAGGAGCTTCGTCGGCCGCCGGAGAATTGGCAGGAGATTGTGGCTGCTCATGAGGAAGAGAGGAGTGTGATTGAGCAGCCGAGGGAGGAGTTTCAGATACCGACGGTTGGGTCGAGTACTTTTGTAGGGGAGAGTATGAATAATAGGTCTTATAAGGGGAGACATTGTAAGAAATTTTATACTGAGGAAGGTTGTCCTTATGGGGATAGTTGTACTTTTCTTCATGATGAGCAATCGAAGAATCGTGAAAGTGTGGCGATTAGTTTAGGTCCTGGTGGTTATGGTGGTGGTGGTGGTGGTGGAGGAGGAGGAGGTGGGAGTGTTGGTAGTGGTGTTGGTAGTGGTAGTGGTGTTGTTGTTGTTGCGGCTGGTGCGGCCGCGGTTGGGAATGGACCTAATTTGAAGCCTTCAAATTGGAAAACTAGGATTTGTAATAAGTGGGAGATGACTGGGTATTGTCCTTTTGGTAACAAATGCCATTTTGCTCATGGTGCTACAGAATTACACAGATATGGAGGTGGACTTATGGAAGGTGAAAGCAGAGACGGTGTTTCTGTTGTTGCGTCTGACACAAAGCAGGGAGTACCTTCCAAAACTCATGCTGATAATGTGGTTGCATCAAATCCTCCTATTGGTTCAGATGTTTATCATCTTGGAGTCCCTTCACAAAGACCTTCCATTGTGAGTCAGAGGCCAGGACAGAGAGCTCATCAGAAGTGGAAAGGTCCCGATAAAATCAGTAGGATATATGGCGATTGGATCGATGACTTCGAATAG 1131 0.4739 MDYNRDGNVVQIITTGGGGAADSWSTDQADWATEDEYRYWNGNDAGGETTPSSNSRAGSEPPSKKSRSNSQDGGGGGSGGGSNRAKAIGKMFFKTKLCCKFRVGTCPYITNCNFAHSVEELRRPPENWQEIVAAHEEERSVIEQPREEFQIPTVGSSTFVGESMNNRSYKGRHCKKFYTEEGCPYGDSCTFLHDEQSKNRESVAISLGPGGYGGGGGGGGGGGGSVGSGVGSGSGVVVVAAGAAAVGNGPNLKPSNWKTRICNKWEMTGYCPFGNKCHFAHGATELHRYGGGLMEGESRDGVSVVASDTKQGVPSKTHADNVVASNPPIGSDVYHLGVPSQRPSIVSQRPGQRAHQKWKGPDKISRIYGDWIDDFE* 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g2047 376 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 257 282 IPR000571 GO:0046872
Mtr8g2047 376 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 93 117 IPR000571 GO:0046872
Mtr8g2047 376 SUPERFAMILY CCCH zinc finger 90 123 IPR036855 GO:0046872
Mtr8g2047 376 SMART c3hfinal6 92 118 IPR000571 GO:0046872
Mtr8g2047 376 SMART c3hfinal6 168 195 IPR000571 GO:0046872
Mtr8g2047 376 SMART c3hfinal6 256 283 IPR000571 GO:0046872
Mtr8g2047 376 Gene3D - 251 288 - -
Mtr8g2047 376 Gene3D - 89 123 - -
Mtr8g2047 376 SUPERFAMILY CCCH zinc finger 165 196 IPR036855 GO:0046872
Mtr8g2047 376 Gene3D - 160 207 - -
Mtr8g2047 376 ProSiteProfiles Zinc finger C3H1-type profile. 256 284 IPR000571 GO:0046872
Mtr8g2047 376 MobiDBLite consensus disorder prediction 45 77 - -
Mtr8g2047 376 MobiDBLite consensus disorder prediction 341 361 - -
Mtr8g2047 376 Pfam CCCH-type zinc finger 172 194 IPR041367 -
Mtr8g2047 376 MobiDBLite consensus disorder prediction 35 83 - -
Mtr8g2047 376 ProSiteProfiles Zinc finger C3H1-type profile. 92 119 IPR000571 GO:0046872
Mtr8g2047 376 SUPERFAMILY CCCH zinc finger 253 287 IPR036855 GO:0046872
Mtr8g2047 376 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 12-LIKE 246 373 - -
Mtr8g2047 376 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 12-LIKE 25 210 - -
Mtr8g2047 376 PANTHER CCCH ZINC FINGER/TIS11-RELATED 25 210 IPR045877 GO:0003729
Mtr8g2047 376 PANTHER CCCH ZINC FINGER/TIS11-RELATED 246 373 IPR045877 GO:0003729
Mtr8g2047 376 ProSiteProfiles Zinc finger C3H1-type profile. 168 196 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g2047 Mtr-Chr8 30325744 30328830 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g2047 258 286 C3H Transcription Factor Family AT1G68200 62.069 3.46e-07 49.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Mtr8g2047 zf-CCCH 1.2e-10 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g2047 - - gmx:100788208 556.214
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g2047 8 30325744 30328830 Mtr8g2047 8 30325744 30328830 ECH