Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g2044 ATGTCAAAACGTGCTTCAAGAGGAAAAAAGGTTCCATTGCTCAAGCTTTTCTCCTTTGCTGACTTCTATGATTATGTCTTGATGGCCGTTGGATCTGTTGGGGCATGCATTCATGGTGCATCTGTTCCTGTTTTCTTTATCTTCTTTGGGAAAATTATTAATGTCGTAGGTTTGGCTTACCTTTTTCCTAAAGAAGCTTCCCACCAAGTTGCCAAGTATGCATTGGATTTTGTGTATCTAAGTATAATAATCTTGTTCTCCTCATGGGCAGAGGTGGCTTGTTGGATGCATACTGGAGAACGTCAAGTAGCAAAGATGAGGATGGCATATTTAAGATCAATGTTGAATCAAGATATAAGTCTTTTTGATACTGAGGGGTCCACTGGAGAGGTTATTTCTTCTATTACAAGTGACATCATTGTTGTTCAAGAAGCATTATCTGAGAAGGTTGGGAACTTTATGCACTTTATAAGCCGATTTATAGCGGGCTTTATCATCGGTTTTTTAAGAGTTTGGCAGATCAGTTTAGTGACACTTGCTATTGTTCCTTTGATTGCTATTGCTGGAGGTCTTTATGCATATGTGACTTTTGGACTTATTGCAAAAGTTCGTAAATCGTATCTGCGGGCAGGTGAAATTGCTCAGGAGGTGATAGGAAATGTTCGAACTGTACAAGCATTTGGAGGAGAACAAAGAGCAGTGATATCATACAAAGTGGCTCTAAGGAACACATATAAGAATGGTCGAAAAGCCGGTTTAGCAAAGGGTCTAGGACTAGGCTCTATGCATTGTGTTCTTTTTCTATCATGGGCTCTGCTTGTTTGGTTCACCAGTATTATTGTTCACAAGAACATCGCCAATGGTGGAAAGGCTTTCGCAACCATGCTCAATGTGGTGATTTCTGGCCTGTCACTTGGGCAGGCAGCACCAGACGTTTCGGCCTTTATCAGAGCAAAGACAGCAGCTTATCCCATTTTTGAGATGATAGAAAGAGACATAGTTAGCAAAAATAGCTCAAAAAATGATCGAAAATTAAAAAAAATAGACGGTCACATACAATTTACTAATGTCTGTTTCAGTTACCCATCTCGCCCTGATGTTGTTATTTTCAACAATTTCTGTCTTGAGATTCCTTCAGGTAAAGTTGTGGCCATTGTTGGAGGGAGTGGTTCAGGAAAAAGCACGATTATATCGTTAATCGAGCGTTTCTATGAACCAATTTCTGGCCAAATTCTGTTAGACAGGAATGATATAAAGGAACTTGATCTGAAATGGCTTAGACATCAAATTGGACTAGTTAATCAAGAGCCTGCACTATTTGCTACAAGCATAAGGGAGAACATATTGTATGGTAAAAATGACGCCACTCCTGAAGAACTAAACCGTGCTTTGGAACTTTCTGATGCTCTTTCTTTCATCAACAATCTTCCTGATGGATTAGATACTCAGGTTGGTGAGAGAGGAATACAATTATCTGGGGGACAAAAGCAGCGAATTGCAATATCTCGTGCTATAGTTAAAAATCCATCAATCCTTTTATTAGATGAAGCAACTAGTGCTTTGGATGCCGAGTCTGAGAAAAGTGTACAAGAAGCTCTTGATCATGTCATGATTGGTAGAACAACTGTGATAGTTGCACACAGACTTTCTACCATTAAGAATGCAGATATGATAGCTGTTGTTGAAGGAGGGAGCGTTGTGGAAACTGGAAATCACGAGGAGCTCATTTCCAATCCAAATAGTTTATATTCATCTCTTGTTCAAGGTCAACCTTCTCCAGATCCTAGCTTGGGACAGTCATCAAGCTTAAAGAACTCAGCAGAAATATCCCATGCAGCAACTATTGGTGGTAGTTTTCATTCAGATAGAAGCTCTATTGGCCATGCACTTGCTGATGAACCAAGAAGTGTTGTAAAGCCAAGGCATGTTTCATTAATAAGATTATATTCAATGATTGGTCCTTATTGGTCTTATGGAGTTTTTGGAACCTTAGCTGCTTTTACTACTGGTGCTCTTATGCCACTTTTTGCTCTTGGAATATCGCATGCTCTTGTATCGTATTATATGGATTGGGATAGCACATGCCATGAAGTGAAAAAAATTGCATTCCTCTTCTGTGGAGCAGCGATTGTAGCTATCACTGCTTATTCCATTGAACATCTTTCTTTTGGAATCATGGGAGAACGACTTACCCTTCGTGTAAGAGGAATTATGCTTTCTGCTATTTTGAAGAATGAAATTGGTTGGTTTGATGATACAAGAAACACAAGTTCTATGCTTTCGTCGCGTTTAGAGACTGATGCAACTTTGTTAAAAACTATAGTAGTCGACCGTTCTACAATTCTCTTGCAGAATGTTGGTCTGGTTGTTACTGCACTTGTCATTGCATTCATTTTGAACTGGAGGATAACACTTGTTGTCTTGGCCACATATCCTTTGATAATAAGTGGTCACATTGGTGAGAAACTTTTCATGCAAGGATTTGGTGGTAATCTAAGCAAAGCATATCTAAAAGCAAATATGTTAGCTGGGGAGGCTGTTAGTAATATAAGGACTGTGGCTGCATTCTGTGCTGAAGAAAAGGTTATTGATCTTTATGCTGATGAGCTTGTTGAGCCTTCCAAACGTTCATTCAAACGAGGCCAAATTGCTGGCATATTTTATGGCATTTCCCAGTTCTTTATTTTCTCATCTTACGGCTTAGCCTTGTGGTATGGATCTGTGTTGCTCGAAAAGGAGCTTGCTAGCTTTAAATCAATCATGAAGTCGTTTATGGTTTTAATAGTAACAGCATTGGCTATGGGGGAGACTTTGGCACTTGCACCCGACCTTCTGAAAGGGAATCAAATGGTTTCGTCAATTTTTGACATGATAGATAGAAAGTCAGGAATAATACATGATGTTGGAGAAGAGTTGATGACAGTGGAAGGAATGATTGAGCTAAAAAGGATCAATTTTATCTATCCTTCAAGACCAAATGTCGTTATTTTTAAGGATTTCAATCTAATAGTGCCTTCAGGGAAGAGTCTTGCCTTGGTAGGGCACAGTGGTTCTGGTAAAAGCTCAATAATCTCCCTTATACTCAGATTTTATGATCCAACGTCCGGGAAGGTGATGATTGATGGAAAAGATATCAAGAAAATGAATTTGAAATCCCTTAGGAAGCAAATTGGGCTAGTACAACAAGAACCAGCTCTATTTGCAACATCAATTTACAAAAACATTCTATATGGAAAAGAAGAAGCATCTGAATCAGAAGTGATTGAAGCAGCTAAACTAGCCGACGCTCATAATTTCATTAGTGCACTTCCCGAAGGCTACTCAACCAAAGCCGGTGATAGAGGAGTTCTACTATCCGGTGGCCAAAAGCAAAGGGTGGCCATTGCAAGAGCTATTTTAAGAAACCCTAAAATATTATTGCTTGATGAAGCAACAAGTGCACTAGATGTCGAATCGGAACGTGTTGTACAACAAGCTTTAGACAAGTTGATGCAAAACAGAACAACAATTATTGTGGCACATAGGCTGTCTACAATAAGAAATGCAGATCAAATAGCAGTTTTGCAGGATGGAAAGATCATTGAGCAAGGCAATCATTCAAGTCTTTTTGAGAATACAGATGGAGCTTACTTCAAATTAGCCAGCCTACAACAAGAAACAGCTACATGTACATGA 3675 0.3921 MSKRASRGKKVPLLKLFSFADFYDYVLMAVGSVGACIHGASVPVFFIFFGKIINVVGLAYLFPKEASHQVAKYALDFVYLSIIILFSSWAEVACWMHTGERQVAKMRMAYLRSMLNQDISLFDTEGSTGEVISSITSDIIVVQEALSEKVGNFMHFISRFIAGFIIGFLRVWQISLVTLAIVPLIAIAGGLYAYVTFGLIAKVRKSYLRAGEIAQEVIGNVRTVQAFGGEQRAVISYKVALRNTYKNGRKAGLAKGLGLGSMHCVLFLSWALLVWFTSIIVHKNIANGGKAFATMLNVVISGLSLGQAAPDVSAFIRAKTAAYPIFEMIERDIVSKNSSKNDRKLKKIDGHIQFTNVCFSYPSRPDVVIFNNFCLEIPSGKVVAIVGGSGSGKSTIISLIERFYEPISGQILLDRNDIKELDLKWLRHQIGLVNQEPALFATSIRENILYGKNDATPEELNRALELSDALSFINNLPDGLDTQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESEKSVQEALDHVMIGRTTVIVAHRLSTIKNADMIAVVEGGSVVETGNHEELISNPNSLYSSLVQGQPSPDPSLGQSSSLKNSAEISHAATIGGSFHSDRSSIGHALADEPRSVVKPRHVSLIRLYSMIGPYWSYGVFGTLAAFTTGALMPLFALGISHALVSYYMDWDSTCHEVKKIAFLFCGAAIVAITAYSIEHLSFGIMGERLTLRVRGIMLSAILKNEIGWFDDTRNTSSMLSSRLETDATLLKTIVVDRSTILLQNVGLVVTALVIAFILNWRITLVVLATYPLIISGHIGEKLFMQGFGGNLSKAYLKANMLAGEAVSNIRTVAAFCAEEKVIDLYADELVEPSKRSFKRGQIAGIFYGISQFFIFSSYGLALWYGSVLLEKELASFKSIMKSFMVLIVTALAMGETLALAPDLLKGNQMVSSIFDMIDRKSGIIHDVGEELMTVEGMIELKRINFIYPSRPNVVIFKDFNLIVPSGKSLALVGHSGSGKSSIISLILRFYDPTSGKVMIDGKDIKKMNLKSLRKQIGLVQQEPALFATSIYKNILYGKEEASESEVIEAAKLADAHNFISALPEGYSTKAGDRGVLLSGGQKQRVAIARAILRNPKILLLDEATSALDVESERVVQQALDKLMQNRTTIIVAHRLSTIRNADQIAVLQDGKIIEQGNHSSLFENTDGAYFKLASLQQETATCT* 1225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g2044 1224 PANTHER ABC TRANSPORTER B FAMILY PROTEIN 8 1220 - -
Mtr8g2044 1224 SUPERFAMILY ABC transporter transmembrane region 641 960 IPR036640 GO:0005524|GO:0016021
Mtr8g2044 1224 ProSitePatterns ABC transporters family signature. 491 505 IPR017871 GO:0005524
Mtr8g2044 1224 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 8 1220 IPR039421 -
Mtr8g2044 1224 Pfam ABC transporter transmembrane region 33 300 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Mtr8g2044 1224 Pfam ABC transporter transmembrane region 661 932 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Mtr8g2044 1224 CDD ABC_MTABC3_MDL1_MDL2 979 1217 - -
Mtr8g2044 1224 Gene3D - 342 601 IPR027417 -
Mtr8g2044 1224 CDD ABC_6TM_Pgp_ABCB1_D2_like 649 964 - -
Mtr8g2044 1224 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 352 588 IPR003439 GO:0005524
Mtr8g2044 1224 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 660 946 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Mtr8g2044 1224 Gene3D - 970 1223 IPR027417 -
Mtr8g2044 1224 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 29 317 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Mtr8g2044 1224 Gene3D ABC transporter type 1, transmembrane domain 15 948 IPR036640 GO:0005524|GO:0016021
Mtr8g2044 1224 ProSitePatterns ABC transporters family signature. 1118 1132 IPR017871 GO:0005524
Mtr8g2044 1224 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 972 1217 IPR027417 -
Mtr8g2044 1224 CDD ABC_6TM_Pgp_ABCB1_D1_like 28 325 - -
Mtr8g2044 1224 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 342 589 IPR027417 -
Mtr8g2044 1224 SMART AAA_5 1006 1192 IPR003593 -
Mtr8g2044 1224 SMART AAA_5 379 571 IPR003593 -
Mtr8g2044 1224 Pfam ABC transporter 998 1146 IPR003439 GO:0005524
Mtr8g2044 1224 Pfam ABC transporter 371 519 IPR003439 GO:0005524
Mtr8g2044 1224 CDD ABC_MTABC3_MDL1_MDL2 352 590 - -
Mtr8g2044 1224 SUPERFAMILY ABC transporter transmembrane region 15 322 IPR036640 GO:0005524|GO:0016021
Mtr8g2044 1224 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 979 1215 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g2044 Mtr-Chr8 30302504 30316311 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g2044 9 1222 Calmodulin-binding Proteins AT2G36910 49.920 0.0 1194
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g2044 K05658 - gmx:100819045 1962.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g2044 8 30302504 30316311 Mtr8g2044 8 30302504 30316311 ECH